PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004512346.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

BES1

Protein Properties

Length: 650aa MW: 73714.1 Da PI: 5.9497

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004512346.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	152.4	3.4e-47	45	194	1	145
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq 95 +g+g+k+++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+reAGw+v++DGttyr ++ p a+ +gs+a +s+es+l+ XP_004512346.1 45 TGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWIVDADGTTYR-QCPP---ASNMGSFAARSVESQLS 135 589*****************************************************************.3444...5899********* PP DUF822 96 .sslkssalaspvesysa.spksssfpspssldsislasa.......asllpvlsvlsl 145 sl++++++ +e++ + +++ ++ +sp+s+ds+ +a+ as++p+ sv++l XP_004512346.1 136 gGSLRTCSVQETLENQPPvVLRIDECLSPASIDSVVIAERdskngkyASVSPINSVDCL 194 99999999888887776516799************9888888888778888877775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	3.4E-48	46	194	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	3.16E-156	212	646	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	1.5E-168	215	645	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	1.0E-84	237	617	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	9.8E-56	252	266	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	9.8E-56	273	291	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	9.8E-56	295	316	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	9.8E-56	388	410	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	9.8E-56	461	480	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	9.8E-56	495	511	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	9.8E-56	512	523	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	9.8E-56	530	553	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	9.8E-56	568	590	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 650 aa Download sequence Send to blast
MKSINEDASV LNLDPQSDHS SDYLAQPQPR RPRGFAAAAM GTNSTGKGKK EREKEKERTK 60 LRERHRRAIT SRMLAGLRQY GNFPLPARAD MNDVLAALAR EAGWIVDADG TTYRQCPPAS 120 NMGSFAARSV ESQLSGGSLR TCSVQETLEN QPPVVLRIDE CLSPASIDSV VIAERDSKNG 180 KYASVSPINS VDCLEADQLM QDIHSGVHES DFNCTPYVPV YIKLPAGIIN KFCQLIDPEG 240 IRQELIHIKS LNIDGVVVDC WWGIVEGWSP QKYVWSGYRE LFNIIREFKL NLQVVMAFHE 300 CGGNDSSDAL ISLPQWVLDI GKENQDIFFT DREGRRNTEC LSWGIDKERV LKGRTGIEVY 360 FDMMRSFRTE FDDLFAEGLI YAVEIGLGAS GELKYPSFSE RMGWRYPGIG EFQCYDKYLQ 420 HSLRRAAKLR GHSFWARGPD NAGHYNSMPH ETGFFCERGD YDNYYGRFFL HWYSQTLTDH 480 ADNVLSLASL AFEETKIIVK VPAVYWWYKS PSHAAELTAG YHNPTNQDGY SPVFEVLRKH 540 AVTMKFVCLG FNLSSQEANE SLVDPEGLSW QALNSAWERG LITAGENALF GYDRERYKRL 600 VEMAKPRNDP DHRHFSFFVY QQPSLLQGNV CLSELDFFIK CMHGEMTGDL

Sequence ? help Back to Top

Protein Sequence Length: 650 aa Download sequence Send to blast

MKSINEDASV LNLDPQSDHS SDYLAQPQPR RPRGFAAAAM GTNSTGKGKK EREKEKERTK  60
LRERHRRAIT SRMLAGLRQY GNFPLPARAD MNDVLAALAR EAGWIVDADG TTYRQCPPAS  120
NMGSFAARSV ESQLSGGSLR TCSVQETLEN QPPVVLRIDE CLSPASIDSV VIAERDSKNG  180
KYASVSPINS VDCLEADQLM QDIHSGVHES DFNCTPYVPV YIKLPAGIIN KFCQLIDPEG  240
IRQELIHIKS LNIDGVVVDC WWGIVEGWSP QKYVWSGYRE LFNIIREFKL NLQVVMAFHE  300
CGGNDSSDAL ISLPQWVLDI GKENQDIFFT DREGRRNTEC LSWGIDKERV LKGRTGIEVY  360
FDMMRSFRTE FDDLFAEGLI YAVEIGLGAS GELKYPSFSE RMGWRYPGIG EFQCYDKYLQ  420
HSLRRAAKLR GHSFWARGPD NAGHYNSMPH ETGFFCERGD YDNYYGRFFL HWYSQTLTDH  480
ADNVLSLASL AFEETKIIVK VPAVYWWYKS PSHAAELTAG YHNPTNQDGY SPVFEVLRKH  540
AVTMKFVCLG FNLSSQEANE SLVDPEGLSW QALNSAWERG LITAGENALF GYDRERYKRL  600
VEMAKPRNDP DHRHFSFFVY QQPSLLQGNV CLSELDFFIK CMHGEMTGDL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wdq_A	1e-127	217	607	11	401	Beta-amylase
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00543	DAP	Transfer from AT5G45300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004512346.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004512346.1	0.0	beta-amylase 8
Swissprot	Q9FH80	0.0	BAM8_ARATH; Beta-amylase 8
TrEMBL	A0A1S2YZF6	0.0	A0A1S2YZF6_CICAR; Beta-amylase
STRING	XP_004512346.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11902	30	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.1	0.0	beta-amylase 2

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]