PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004512565.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family Dof
Protein Properties Length: 333aa    MW: 36844.6 Da    PI: 9.0272
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004512565.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.94.6e-383898262
          zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                    +e++++cprC s ntkfCyynnysl+qPryfCk+CrryWtkGGalrnvP+Ggg+rknkk++
  XP_004512565.1 38 QEQNMNCPRCYSPNTKFCYYNNYSLTQPRYFCKTCRRYWTKGGALRNVPIGGGCRKNKKMK 98
                    57899*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-223990IPR003851Zinc finger, Dof-type
PfamPF027017.0E-324096IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.7794296IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104480IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010052Biological Processguard cell differentiation
GO:0010118Biological Processstomatal movement
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1902066Biological Processregulation of cell wall pectin metabolic process
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MSPDETQPSK SAKDKDNQNG SLGRKTSSSS TSSSTRPQEQ NMNCPRCYSP NTKFCYYNNY  60
SLTQPRYFCK TCRRYWTKGG ALRNVPIGGG CRKNKKMKSS SSSRLSCDLK DSASSSSLEL  120
GGLNFLHTIS PSIDFHLGNN LPFPPRLQLH QNHHTPMLFN QFSSSYDETN SSTPLTTVSS  180
TFNLDSTQNS VAAMNYPFSN YNGVIQGMSS MNIHTNLESL SSMNQDLHWK LQQQRLTMMF  240
GAENQKDNNQ TQKPQPILFE NVEVSKGNGG NNLCVGNSRR EVGDTPSEWF FGNSYNGSVT  300
VTAAARPTGS NGGAGSNNWN GWTDVHQQYN ALP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004512565.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9317411e-88CR931741.1 Medicago truncatula chromosome 5 clone mte1-54m21, COMPLETE SEQUENCE.
GenBankCR9369461e-88CR936946.2 Medicago truncatula chromosome 5 clone mth2-77l22, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004512565.10.0dof zinc finger protein DOF5.7
TrEMBLA0A1S2YZY30.0A0A1S2YZY3_CICAR; dof zinc finger protein DOF5.7
STRINGXP_004512565.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38543460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65590.12e-47Dof family protein