PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004512836.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GRAS
Protein Properties Length: 624aa    MW: 69160.5 Da    PI: 6.7852
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004512836.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS309.76.8e-952536242374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     +++L+e+A a+s+g++  a ++L+r  ++ +p++++ qRl+ +++ AL++r+++    + +  p+ e     s+e++ +++l+ e s ++ ++++
  XP_004512836.1 253 KQTLIEAASAISEGKNDVALEILNRFVQNLNPNANSDQRLTNCMVSALKSRMNS----VENPPPVVELF---SKEHAESTRLLLENSVCFSVGFM 340
                     689**************************************************9....55555555554...99999****************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.vak..rle 187
                     + N aIlea+  ++   ++Df+i+qG Q+++Ll+aL +R+  p  +l+i +v++++ g  e+ +++ge L++ Ae+l++ fef+++ + +  r++
  XP_004512836.1 341 ASNLAILEAAFDHNGFCVVDFEIGQGKQYINLLHALKARDVLPGfTLKIVAVAAENGGGDESFKAVGEMLSRQAEKLRIAFEFRIVtI-SqrRVN 434
                     ****************************************77666*********8888***************************963.3359** PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     +l+ e L ++++E+l+Vn++++l r++desvs+e++rde+L+ vk+lsP+vv++ eqe++ n+++Fl+r++e+ +yysal+ds+e+ l++++++r
  XP_004512836.1 435 ELTRELLGCHSDETLVVNFAFKLNRIPDESVSTENPRDELLRRVKKLSPRVVTILEQEMNGNTAPFLARVAESWSYYSALYDSVESVLGKDNSDR 529
                     *********************************************************************************************** PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr...kvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                     +++E+  l+r+++n vaceg++r+er+e ++kWr+r+++aGF   p+s+++a+++k+ l+   +   + g +v+ee+g +++gW++r+L+++SaW
  XP_004512836.1 530 VMIEEG-LSRKLCNSVACEGRDRVERCEVFGKWRARMSMAGFMLKPMSQNVAESIKSRLAvgnNNRvNTGLSVKEENGGICFGWMGRTLTVASAW 623
                     ******.************************************************998852223345679************************* PP

            GRAS 374 r 374
                     r
  XP_004512836.1 624 R 624
                     8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.223226600IPR005202Transcription factor GRAS
PfamPF035142.3E-92253624IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MSSPGFNGGV GSSDFYSGRS SNTTNNNDNL HHPSLYRTQQ QLPPIFLDPS SQIQRQPQPF  60
IGKRTLAEFQ TQQNQTYNNN SSNNNNNHVL SNLLLRSVKP RTNFQFQNNS PLSFSLPELQ  120
NPLSFNYHTQ RLGVPLLHQL RPQPINPNFN YRTSNLGPGI LNRVQNQNTE PEKKISDNVL  180
LQELEKQLLE DNDEGEEADA ASVITTSEWS ETYQNLIGPG PTQAQKPASS SPTSSTTSST  240
SSSAASPASV CSKQTLIEAA SAISEGKNDV ALEILNRFVQ NLNPNANSDQ RLTNCMVSAL  300
KSRMNSVENP PPVVELFSKE HAESTRLLLE NSVCFSVGFM ASNLAILEAA FDHNGFCVVD  360
FEIGQGKQYI NLLHALKARD VLPGFTLKIV AVAAENGGGD ESFKAVGEML SRQAEKLRIA  420
FEFRIVTISQ RRVNELTREL LGCHSDETLV VNFAFKLNRI PDESVSTENP RDELLRRVKK  480
LSPRVVTILE QEMNGNTAPF LARVAESWSY YSALYDSVES VLGKDNSDRV MIEEGLSRKL  540
CNSVACEGRD RVERCEVFGK WRARMSMAGF MLKPMSQNVA ESIKSRLAVG NNNRVNTGLS  600
VKEENGGICF GWMGRTLTVA SAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B3e-2625262487473Protein SHORT-ROOT
5hyz_A8e-2728762438375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004512836.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004512836.10.0scarecrow-like protein 8
SwissprotQ9FYR71e-153SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A1S2Z0G20.0A0A1S2Z0G2_CICAR; scarecrow-like protein 8
STRINGXP_004512836.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62663151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-143SCARECROW-like 8