PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004512922.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NAC
Protein Properties Length: 324aa    MW: 37003.4 Da    PI: 8.134
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004512922.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.19.7e-5551311129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+++yL+ k+++++++  ++++ vd++k+ePwdLp k++ +ekewyfFs rd+ky+tg r+nrat+sgyWk+tgkdke+++ 
  XP_004512922.1   5 LPPGFRFHPTDEELITHYLTMKISDHSFTS-KAVAVVDLNKSEPWDLPGKASMGEKEWYFFSVRDRKYPTGLRTNRATESGYWKTTGKDKEIFR- 97 
                     79*************************999.88***************988999****************************************. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
                     +g lvg+kktLvfykgrap+gek++Wvmheyrle
  XP_004512922.1  98 GGVLVGMKKTLVFYKGRAPRGEKSNWVMHEYRLE 131
                     ********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-643151IPR003441NAC domain
PROSITE profilePS5100560.5035151IPR003441NAC domain
PfamPF023657.4E-296130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEENLPPGFR FHPTDEELIT HYLTMKISDH SFTSKAVAVV DLNKSEPWDL PGKASMGEKE  60
WYFFSVRDRK YPTGLRTNRA TESGYWKTTG KDKEIFRGGV LVGMKKTLVF YKGRAPRGEK  120
SNWVMHEYRL ENKHHFRSSK DEWVVCRVFQ KSIASKKPQQ TSSSQPQSPC DTTSIVNEFG  180
DVELHHMDYS TNNISPQNFN TNNVNTNMNL TMNSWPSSSD VPHSLPISLP WPSSLLNPNN  240
INVNSLLLKA LQLRSYQQQR EVVAPTNIHH FAPYMSQVGV LSHSQLGNDQ SNNDSNISAS  300
SSKVLECMPQ HNQQEQPFNL DSIW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-57415719174NAC domain-containing protein 19
3swm_B1e-57415719174NAC domain-containing protein 19
3swm_C1e-57415719174NAC domain-containing protein 19
3swm_D1e-57415719174NAC domain-containing protein 19
3swp_A1e-57415719174NAC domain-containing protein 19
3swp_B1e-57415719174NAC domain-containing protein 19
3swp_C1e-57415719174NAC domain-containing protein 19
3swp_D1e-57415719174NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00364DAPTransfer from AT3G18400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004512922.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004512922.10.0NAC domain-containing protein 100
TrEMBLA0A1S2Z0M90.0A0A1S2Z0M9_CICAR; NAC domain-containing protein 100
STRINGXP_004512922.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49463356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.11e-94NAC domain containing protein 58