PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004513326.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ZF-HD
Protein Properties Length: 171aa    MW: 18962 Da    PI: 8.3718
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004513326.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer96.42.2e-301268258
     ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                    +++ Y+eCl+NhAaslG++a+DGCgEf+ ++++ + +++l+CaACgCHRnFHR+ ++
  XP_004513326.1 12 QNYIYRECLRNHAASLGSYATDGCGEFTVDNTSPTAVNSLQCAACGCHRNFHRKITA 68
                    5789**************************8888*******************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.6E-251466IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-171665IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.641666IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.3E-261665IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.12E-1581152IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.4E-2785153IPR009057Homeodomain-like
TIGRFAMsTIGR015651.8E-2894152IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MEMLSSSSSH SQNYIYRECL RNHAASLGSY ATDGCGEFTV DNTSPTAVNS LQCAACGCHR  60
NFHRKITASY TAAAMSDQVM EYSGGGGSGG DGRRKRYRSK FTADQKEKML EFAEKLGWKL  120
QRKELDEEIE RFCESVGVSR QVFKVWMHNH KNSSFSNSSP STGNANSSLT Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A9e-23941631780ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004513326.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1602421e-147AC160242.15 Medicago truncatula chromosome 6 clone mth2-65g16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004513326.11e-127zinc-finger homeodomain protein 2-like
SwissprotA2XLF41e-40ZHD11_ORYSI; Zinc-finger homeodomain protein 11
SwissprotQ10DV51e-40ZHD11_ORYSJ; Zinc-finger homeodomain protein 11
SwissprotQ9FKP83e-40ZHD1_ARATH; Zinc-finger homeodomain protein 1
TrEMBLA0A1S2Z1I31e-125A0A1S2Z1I3_CICAR; zinc-finger homeodomain protein 2-like
STRINGXP_004513326.11e-126(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79822844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-33homeobox protein 22
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]