PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004513385.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GRAS
Protein Properties Length: 442aa    MW: 50061.9 Da    PI: 7.2574
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004513385.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3841.8e-117234382373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lL+ecA++v++g+ ++a+  L+ +s+++spdg+++qR+++yf eAL  r++++ +++ykal++s+ts   ss+ + ++k+f++++P+lkfs+l
  XP_004513385.1  23 ISLLIECAKCVATGSIKNADIGLEYISQISSPDGNAVQRMVTYFSEALGYRIVKHLPGVYKALNSSKTS--LSSDDILVQKYFYDLCPFLKFSYL 115
                     579*************************************************************99998..79********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                     ++NqaI e++e e+ vHiiD+  s+++QW+ Llq+L +R++gpp+l+iTg+++    +ke le++   L+  A +l+ p++fn+ ++++led+++
  XP_004513385.1 116 ITNQAIIESMEFEKVVHIIDLHCSEPAQWIDLLQTLKKRKGGPPHLKITGIHE----KKEVLEQMSLHLTAEAGKLDFPLQFNP-IVSKLEDVDF 205
                     *****************************************************....9**************************.7999****** PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrll........................................................desvsleserdevLkl 230
                     ++L vk+gEa+a+ +vlqlh+ll                                                          s ++      +L++
  XP_004513385.1 206 DNLPVKTGEAVAITSVLQLHSLLatddemagrispagptsfnlqravhmsqrtfaewlerdminayilspdsalsplflGASPKMGI----FLNA 296
                     ***********************************************************************9999888877777777....**** PP

            GRAS 231 vkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFk 325
                     +++l+Pk++vv+eqe+++n+ ++ler+ +al++ysalfd+le+++ r+s er+k+E  llg++i+n++aceg +r+erhe+lekW+ rle+aG  
  XP_004513385.1 297 MRKLQPKLIVVTEQESNLNGCNLLERIDRALYFYSALFDCLESTVTRTSMERQKLESILLGKQIKNIIACEGVDRKERHEKLEKWNLRLEMAGCV 391
                     *********************************************************************************************** PP

            GRAS 326 pvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     +vpls++   +a  ll+k++ + y+  e +++l+ +W+d pL+svSaW
  XP_004513385.1 392 KVPLSYNGRIEATNLLQKYSHK-YKFREVNDCLLVCWSDIPLFSVSAW 438
                     ********************77.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.1551420IPR005202Transcription factor GRAS
PfamPF035146.2E-11523438IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MDSGSPYHWL RELRCDSNSS NPISLLIECA KCVATGSIKN ADIGLEYISQ ISSPDGNAVQ  60
RMVTYFSEAL GYRIVKHLPG VYKALNSSKT SLSSDDILVQ KYFYDLCPFL KFSYLITNQA  120
IIESMEFEKV VHIIDLHCSE PAQWIDLLQT LKKRKGGPPH LKITGIHEKK EVLEQMSLHL  180
TAEAGKLDFP LQFNPIVSKL EDVDFDNLPV KTGEAVAITS VLQLHSLLAT DDEMAGRISP  240
AGPTSFNLQR AVHMSQRTFA EWLERDMINA YILSPDSALS PLFLGASPKM GIFLNAMRKL  300
QPKLIVVTEQ ESNLNGCNLL ERIDRALYFY SALFDCLEST VTRTSMERQK LESILLGKQI  360
KNIIACEGVD RKERHEKLEK WNLRLEMAGC VKVPLSYNGR IEATNLLQKY SHKYKFREVN  420
DCLLVCWSDI PLFSVSAWSF RR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-532844125381Protein SCARECROW
5b3h_A4e-5354411380Protein SCARECROW
5b3h_D4e-5354411380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004513385.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004513385.10.0scarecrow-like protein 3
SwissprotQ9LPR81e-149SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A1S2Z1N20.0A0A1S2Z1N2_CICAR; scarecrow-like protein 3
STRINGXP_004513385.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145191017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-152scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]