PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004513413.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

HB-other

Protein Properties

Length: 520aa MW: 58923 Da PI: 6.4657

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004513413.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.1	2.7e-17	21	75	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t+ ql +Le++++ ++yp++e++ eLA++l Lte+q++ WF+ rR k+k+ XP_004513413.1 21 KRKLKTPAQLMALENFYNDHKYPTEEMKFELANELVLTEKQISGWFCHRRLKDKR 75 78889************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-18	3	75	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.386	16	76	IPR001356	Homeobox domain
SMART	SM00389	2.0E-16	18	80	IPR001356	Homeobox domain
CDD	cd00086	9.68E-15	21	75	No hit	No description
Pfam	PF00046	8.3E-15	21	75	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.15E-15	21	84	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence Send to blast
MDEPNEMQLE DNKTSMEKNI KRKLKTPAQL MALENFYNDH KYPTEEMKFE LANELVLTEK 60 QISGWFCHRR LKDKRLMRDE VCANNGRQDR SSGVVQDRGS GLGQDSCGST KHGGDYRYLD 120 PKEVESNGVY NHELSVANMN YAHTNLYTEN DSETDNTSSE NSSSLQERLF LQGHDPYDTE 180 PSRYITQNGA LPPLNPKGYK PSGYLKLKGE IEHAAVTAVK NQLGRNYLED GPLLTVDFDT 240 IPPEAFECQT ANSIKESYHV ANPSLAKRQS NLNSRYDPYF NKSSSQDLQM EGGDFGPSHG 300 SDFQDKQDKK SRQRIKQRTT FQGRAVRTNP LPGKSFPPDL YIDSTVEAPA YNSTRNHRIG 360 AKHGVERMKS DSASNPNDLY EENNNPAIEQ EGPLLHDYNN SNVKNVRTSE YVKSKPSNSI 420 RNSRISMDTE ERGLSERMAK EEKRNGIRKV KKPSHESDGG RIPSKETMVA KRAKVDLLRQ 480 YDIKQEPVAE IEPRKTQRSA VEMPSSFSED ETAETSSSLD

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence Send to blast

MDEPNEMQLE DNKTSMEKNI KRKLKTPAQL MALENFYNDH KYPTEEMKFE LANELVLTEK  60
QISGWFCHRR LKDKRLMRDE VCANNGRQDR SSGVVQDRGS GLGQDSCGST KHGGDYRYLD  120
PKEVESNGVY NHELSVANMN YAHTNLYTEN DSETDNTSSE NSSSLQERLF LQGHDPYDTE  180
PSRYITQNGA LPPLNPKGYK PSGYLKLKGE IEHAAVTAVK NQLGRNYLED GPLLTVDFDT  240
IPPEAFECQT ANSIKESYHV ANPSLAKRQS NLNSRYDPYF NKSSSQDLQM EGGDFGPSHG  300
SDFQDKQDKK SRQRIKQRTT FQGRAVRTNP LPGKSFPPDL YIDSTVEAPA YNSTRNHRIG  360
AKHGVERMKS DSASNPNDLY EENNNPAIEQ EGPLLHDYNN SNVKNVRTSE YVKSKPSNSI  420
RNSRISMDTE ERGLSERMAK EEKRNGIRKV KKPSHESDGG RIPSKETMVA KRAKVDLLRQ  480
YDIKQEPVAE IEPRKTQRSA VEMPSSFSED ETAETSSSLD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004513413.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004513413.1	0.0	homeobox-DDT domain protein RLT1-like
TrEMBL	A0A1S2Z1P2	0.0	A0A1S2Z1P2_CICAR; homeobox-DDT domain protein RLT1-like
STRING	XP_004513413.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5792	30	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	2e-76	HB-other family protein