PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004513583.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

Protein Properties

Length: 322aa MW: 37072.9 Da PI: 8.0167

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004513583.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	103.2	1.5e-32	69	173	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k ltpsdv+k++rlv+pk++ae++ ++ + ++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F++++ ++ XP_004513583.1 69 FEKPLTPSDVGKLNRLVIPKQHAEKYfplgggDSGECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFERHRVDS 163 99**************************87444457889********************************************887799 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 ++l++ ++r+ XP_004513583.1 164 QRLFINWRRR 173 99***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	4.84E-32	64	172	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	4.2E-40	64	173	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.20E-30	67	164	No hit	No description
Pfam	PF02362	2.5E-29	69	173	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.297	69	174	IPR003340	B3 DNA binding domain
SMART	SM01019	1.0E-25	69	174	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MDLQGTTLWW TQNQPQQTML LVEPIHHPQP QWFNSQTYPN TPHFNTNEEN EDKDNTAIKL 60 IEDEKEPMFE KPLTPSDVGK LNRLVIPKQH AEKYFPLGGG DSGECKGLLL SFEDESGKCW 120 RFRYSYWNSS QSYVLTKGWS RYVKDKRLDA GDVVLFERHR VDSQRLFINW RRRKLNGNET 180 AQVSRGKVSD GNGKNEVAVG WSRGFYPAHP YPAHHLLPYQ HDHCLHAGRG SPQGQNQRTK 240 PVGNNSSSSS SSPRELRLFG VTMVCQPEHD STPQCSSYDS NNMPSTQGTD HTQHLYHYHQ 300 PSSHNSNSNS HSHVVRHQPY YY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	7e-49	64	173	3	113	B3 domain-containing transcription factor NGA1
5os9_B	7e-49	64	173	3	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004513583.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC218728	1e-48	KC218728.1 Vicia faba clone NAC-VF-156 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004513583.1	0.0	B3 domain-containing protein At2g36080-like
Swissprot	Q9FNI3	2e-61	Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBL	A0A1S2Z230	0.0	A0A1S2Z230_CICAR; B3 domain-containing protein At2g36080-like
STRING	XP_004513583.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5739	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06250.2	1e-59	B3 family protein