PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004513942.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

SBP

Protein Properties

Length: 315aa MW: 34940.8 Da PI: 8.4909

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004513942.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.5	6.2e-41	149	226	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++ l +akeyh+rhkvCe+hskap+v+v gleqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++ XP_004513942.1 149 RCQVEGCHVALMNAKEYHKRHKVCEMHSKAPKVVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSH 226 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.9E-34	144	211	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.009	147	224	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.01E-38	148	229	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	7.2E-32	150	223	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MDFGGNMFCL NNRDQNNVTN GNSNSNGFTW VSTWDTTNTF HVTAENSAVN RQEGGLANAL 60 MFVPHNAVGG RQYRSNYAEA YGGRDLSNSH VQLDPHLTCL KLGKRHYFED ASGGGGGGGL 120 VVSDKRGKGG YCSGGKTSAA LGVGSSVARC QVEGCHVALM NAKEYHKRHK VCEMHSKAPK 180 VVVLGLEQRF CQQCSRFHVV SEFDDSKRSC RRRLAGHNER RRKSSHDSVA RNSQQGECAL 240 SLLSSRTDSW LSPADLSIRC SAALSELIAE NRAAIMARQY VPERDWHVQH HSVEDYKEIQ 300 QESNYFPQQM FPQTH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	8e-30	144	223	4	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004513942.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004513942.1	0.0	squamosa promoter-binding-like protein 7
Swissprot	Q7XT42	5e-54	SPL7_ORYSJ; Squamosa promoter-binding-like protein 7
TrEMBL	A0A1S2Z2N0	0.0	A0A1S2Z2N0_CICAR; squamosa promoter-binding-like protein 7
STRING	XP_004513942.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9613	27	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	1e-37	squamosa promoter binding protein-like 3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]