PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004514173.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

FAR1

Protein Properties

Length: 285aa MW: 33315.8 Da PI: 6.0559

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004514173.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54	5.4e-17	41	126	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+eYA++ GF ++++s+k ++ge + Cs+eg++ ++ + + +t +++ +C ak+++k++kdg w++tk+e +H+He + XP_004514173.1 41 SFYEEYASRKGFGWKIRYSRKG-QDGELCYLILACSREGSKVSKISC---TLKTLPTKVNNCPAKIVIKLDKDGLWYITKFEPDHTHETS 126 5***************9998.8889**********998877...8899999999*************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-14	41	126	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MDCGTIEDEG IRVDNLDDDD NTCCWEPTTW MCFSCLEEVK SFYEEYASRK GFGWKIRYSR 60 KGQDGELCYL ILACSREGSK VSKISCTLKT LPTKVNNCPA KIVIKLDKDG LWYITKFEPD 120 HTHETSPTKA RLFKANKKMN LHVKRTIQIN DDAGVRINKT FQSLVKDVGG HENVPFCERD 180 MRNYVNKERR AIGKEGDGKA LISYFCQMRE QNSDFFYDID LDDDFHVRNV FWVDARSRAA 240 YEYFGDVVTF DTTYLTNKYD MPFCCVCWCE SPWSINITWM WTVVR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004514173.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004514173.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A1S2Z343	0.0	A0A1S2Z343_CICAR; protein FAR-RED IMPAIRED RESPONSE 1-like
STRING	XP_004514173.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	3e-31	FAR1 family protein