PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004514445.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family G2-like
Protein Properties Length: 348aa    MW: 39006.3 Da    PI: 7.8456
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004514445.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1071e-333690155
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl
  XP_004514445.1 36 KPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 90
                    79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-323391IPR009057Homeodomain-like
PROSITE profilePS5129412.8013393IPR017930Myb domain
SuperFamilySSF466891.7E-163591IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-233691IPR006447Myb domain, plants
PfamPF002492.5E-83888IPR001005SANT/Myb domain
PfamPF143791.6E-21129167IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MERMFPSKKP LTMNSSHERP MCVQGDSGLV LTTDPKPRLR WTVELHERFV DAVAQLGGPD  60
KATPKTIMRV MGVKGLTLYH LKSHLQKFRL GKQPHKEFNE QSVKDVSAFE LQRNTGTSSS  120
MTGRNMNEMQ MEVHRRLHEQ LEVQKHLQLR IEAQGKYMQS ILEKAYSTLA GENMAVSATN  180
FKGVIGTQGT PNLSIMKDFV SPLNYPPFQD LNICGSDDEQ LDLHHHIIER PTLDEMLMPN  240
NNENLFVGKK RPSPNFNGGS GKSPLIWNDN DLRLHDLGTA SSSISPQDVP NFKGDDESDI  300
IYDTKVGEKK FDASMKLGIS SPSRVTFQSE RMSPMINVVA GHSSSPFG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-193692258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-193692258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-193692157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-193692157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-193692157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-193692157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-193692258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-193692258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-193692258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-193692258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-193692258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-193692258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004514445.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0526380.0BT052638.1 Medicago truncatula clone MTYFD_FE_FF_FG1G-O-4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004514445.10.0myb family transcription factor APL-like isoform X2
SwissprotQ9SAK51e-113APL_ARATH; Myb family transcription factor APL
TrEMBLA0A1S2Z3L90.0A0A1S2Z3L9_CICAR; myb family transcription factor APL-like isoform X2
STRINGXP_004514444.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79430.21e-115G2-like family protein
Publications ? help Back to Top
  1. Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R
    Vascular gene expression: a hypothesis.
    Front Plant Sci, 2013. 4: p. 261
    [PMID:23882276]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kondo Y, et al.
    Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells.
    Plant Cell, 2016. 28(6): p. 1250-62
    [PMID:27194709]
  4. Shibuta M,Abe M
    FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells.
    Plant Cell Physiol., 2017. 58(11): p. 2017-2025
    [PMID:29036620]