PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004514529.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NAC
Protein Properties Length: 362aa    MW: 42341.4 Da    PI: 6.2394
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004514529.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.61.2e-5371361129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     +ppGfrFhPtdeelv++yL+kk+++++++l +vik+vd+yk+eP ++++  ++ + e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++
  XP_004514529.1   7 VPPGFRFHPTDEELVDYYLRKKIASRRIDL-DVIKDVDLYKIEPYEFKEicRIGTeEQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAI 100
                     69****************************.9***************854555442556************************************ PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                     +s k+ l+g++ktLvfykgrap+g+k+dW+mheyrle
  XP_004514529.1 101 YS-KHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136
                     **.8899****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-594156IPR003441NAC domain
PROSITE profilePS5100558.5947156IPR003441NAC domain
PfamPF023651.5E-288135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MNNFSHVPPG FRFHPTDEEL VDYYLRKKIA SRRIDLDVIK DVDLYKIEPY EFKEICRIGT  60
EEQNEWYFFS HKDKKYPTGT RTNRATTAGF WKATGRDKAI YSKHDLIGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETDEN GTPQEEGWVV CRVFKKRVTT MRKVMSEHDS PSWYDDQLSF  180
NMQDMVDSPN QTSYQSNLVY QQLPLYPCKK ELEHLQFQLP RDQFLQLPLL ESPKLLQPNS  240
STNLTSNNPM IPTFNALNLP SSILIEEQQV LQNGQQNLHH GIVYGNNCHE QNVDDQVTDW  300
RVLDKFVASQ LSQDGSKDNN NNMFHGTDDN SNVQFRNLEK QEMVHEINAS TSNSSCPIDL  360
WK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-48716217171NO APICAL MERISTEM PROTEIN
1ut4_B5e-48716217171NO APICAL MERISTEM PROTEIN
1ut7_A5e-48716217171NO APICAL MERISTEM PROTEIN
1ut7_B5e-48716217171NO APICAL MERISTEM PROTEIN
3swm_A5e-48716220174NAC domain-containing protein 19
3swm_B5e-48716220174NAC domain-containing protein 19
3swm_C5e-48716220174NAC domain-containing protein 19
3swm_D5e-48716220174NAC domain-containing protein 19
3swp_A5e-48716220174NAC domain-containing protein 19
3swp_B5e-48716220174NAC domain-containing protein 19
3swp_C5e-48716220174NAC domain-containing protein 19
3swp_D5e-48716220174NAC domain-containing protein 19
4dul_A5e-48716217171NAC domain-containing protein 19
4dul_B5e-48716217171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00136DAPTransfer from AT1G12260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004514529.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027186315.10.0NAC domain-containing protein 7
SwissprotQ9FWX21e-141NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A3Q7YB740.0A0A3Q7YB74_CICAR; NAC domain-containing protein 7
STRINGXP_004514529.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126933106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-121NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]