PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004515465.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GRAS
Protein Properties Length: 736aa    MW: 81422.3 Da    PI: 5.5455
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004515465.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS326.84.3e-1003727351374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+++L+++Ae++++g+ ela+ +Larl++++sp g+p+qR+ ++f+eAL+  l+++ ++  +  ++ + s++    ++ a+k fse+sP+l+f++
  XP_004515465.1 372 LIDQLFKAAEMIDAGNPELAHGILARLNHQVSPIGKPFQRASFHFKEALQLFLQSNNNNSNSNNSSLSFSPTGLLLKIGAYKSFSEISPVLQFAN 466
                     5789***************************************************888888888888888889********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +t Nqa+leaveg +r+HiiDfdi+ G+QW +++q+La R++g+p l+iT+++sp+++++ el+ t+e+L+++A+e++++fe ++l+ +++++ +
  XP_004515465.1 467 FTSNQALLEAVEGFDRIHIIDFDIGFGGQWSSFMQELALRNGGAPALKITAFVSPSHHDEIELSFTHENLKQYASEINMSFELEILTFESMNSAS 561
                     *************************************************************************************9888887774 PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerik 284
                      +   ++  Ea++Vnl +  ++ +      +s+ + vL++vk+l Pk+vv  ++ +d+++++F ++++ al+ ys+l++sl ++++  + +  ++
  XP_004515465.1 562 -WPQPLRDCEAVVVNLPIGSFSNY------PSYLPLVLRFVKQLMPKIVVTLDRSCDRTDAPFPQHLIFALQSYSSLLESLdAVSVNVHPDVLQM 649
                     .4446799**********888877......677788*********************************************667777777999** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +E+ +l+++i+++v+ + ++    + +   W++ + ++GF+p+++s+++++qa++l+++++++g++ve+++ slvl+W+++ L+svS Wr
  XP_004515465.1 650 IEKYYLQPAIEKLVSGRLRS----QDRTLPWKNLMLSSGFSPMTFSNFTESQAECLVQRIPGRGFHVEKKQSSLVLCWQRKDLISVSTWR 735
                     **************998887....666679***********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.402346715IPR005202Transcription factor GRAS
PfamPF035141.5E-97372735IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MNEMKAMPLP FQEYIGKGVL DFVGGGVSNS NSNSNSDSFL SPQQQEQFLL QRWRREENCC  60
YAAEGIDPSS LVVFDLKKTT PTSSSTLSSS HGSAAGGGGS TDSAAAAKDY NNNNNNISQV  120
EGGCGGMGME DWESVLSESP SQDHSILKLI MEDIEDASMG LSKLLQVGNG NGSGNGSHSH  180
SQDVVEFNGF SFMDQQSSVV LDPIPSTNVN NNFVTSIETC SDFPFSRLNQ NPMFHSSASN  240
SNNPQSLFQS METQAVNNNP HFVLNQNQAV SQFMPNNNNP GLVFPFTYSQ LQENQQQVQP  300
PAKRLNCGTN YQVPKTPFLD SGQDMFLRRQ QQQLQLLPHH LQHRPSSGVM APKQKMGGGG  360
EDVAIHQLQQ ALIDQLFKAA EMIDAGNPEL AHGILARLNH QVSPIGKPFQ RASFHFKEAL  420
QLFLQSNNNN SNSNNSSLSF SPTGLLLKIG AYKSFSEISP VLQFANFTSN QALLEAVEGF  480
DRIHIIDFDI GFGGQWSSFM QELALRNGGA PALKITAFVS PSHHDEIELS FTHENLKQYA  540
SEINMSFELE ILTFESMNSA SWPQPLRDCE AVVVNLPIGS FSNYPSYLPL VLRFVKQLMP  600
KIVVTLDRSC DRTDAPFPQH LIFALQSYSS LLESLDAVSV NVHPDVLQMI EKYYLQPAIE  660
KLVSGRLRSQ DRTLPWKNLM LSSGFSPMTF SNFTESQAEC LVQRIPGRGF HVEKKQSSLV  720
LCWQRKDLIS VSTWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-3438573516375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004515465.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004515465.10.0scarecrow-like protein 27 isoform X1
SwissprotO813161e-134SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A1S2Z5J30.0A0A1S2Z5J3_CICAR; scarecrow-like protein 27 isoform X1
STRINGXP_004515465.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-117GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]