PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004515643.2

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

LBD

Protein Properties

Length: 132aa MW: 14533.6 Da PI: 8.4706

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004515643.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.3	6.4e-44	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk++rrkC+++Cv+apyfp ++p+kfa+vhk+FGasnv kll++++ ++reda++sl+yeAear+rdPvyG+vg+i+ lq++l++l+ el+ XP_004515643.2 7 PCAACKIQRRKCTEECVFAPYFPPDNPQKFAYVHKVFGASNVAKLLNEVNASQREDAVKSLAYEAEARLRDPVYGCVGLISLLQHNLKSLQIELN 101 7********************************************************************************************** PP DUF260 96 llkee 100 +k+e XP_004515643.2 102 NAKKE 106 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.785	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.0E-44	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 132 aa Download sequence Send to blast
MVPWNTPCAA CKIQRRKCTE ECVFAPYFPP DNPQKFAYVH KVFGASNVAK LLNEVNASQR 60 EDAVKSLAYE AEARLRDPVY GCVGLISLLQ HNLKSLQIEL NNAKKELASY WSSSYASSIT 120 TAAATTIFTA AA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-49	5	126	9	130	LOB family transfactor Ramosa2.1
5ly0_B	2e-49	5	126	9	130	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004515643.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004515643.3	2e-78	LOB domain-containing protein 36-like isoform X1
Refseq	XP_027186721.1	1e-78	LOB domain-containing protein 36-like isoform X2
Swissprot	Q9FKZ3	1e-58	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A1S2Z5W9	4e-77	A0A1S2Z5W9_CICAR; LOB domain-containing protein 36-like isoform X1
TrEMBL	A0A3Q7XSB2	3e-77	A0A3Q7XSB2_CICAR; LOB domain-containing protein 36-like isoform X2
STRING	XP_004515644.1	5e-78	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2353	34	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	5e-58	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]