PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004515897.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GRAS
Protein Properties Length: 516aa    MW: 58518.2 Da    PI: 6.8163
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004515897.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS367.91.4e-1121465151374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfs 94 
                     lv+lL++cAeav+ +d++ a+ lL++l+ +a   g+++qR+a++f+++L +rl+  +  + +   ++ +  +  s+e   a+kl +e++P ++f+
  XP_004515897.1 146 LVQLLIACAEAVACRDKSHASILLSELKSNALVFGSSFQRVASCFVQGLTERLTMIQ-PIGSVTkSMMNIMDAASEEMEEAFKLVYEICPHIQFG 239
                     689**************************************************9843.33333313333333348888899************** PP

            GRAS  95 hltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                     h++aN+ Ilea+ege+ vH++D+++s    +G QW  L+++LasR+ +   +lRiTgvg        +++ +ge L+ +A++lg+++ef++ v k
  XP_004515897.1 240 HFVANSIILEAFEGESFVHVVDLGMSlglpHGHQWRGLIRSLASRSsQRVRRLRITGVGL----CIARIQVIGEELSVYANNLGIHLEFSI-VDK 329
                     **********************99874444678*************55566*********....**************************9.79* PP

            GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                     +le+l++e+++v+++E+l+Vn++lqlh +++es    +   +vL+++ +lsPkv+v+veq++ hn++ Fl rf+e+l+yysa+fdsl+a lp+ +
  XP_004515897.1 330 NLENLKPEDIKVNEKEVLVVNSILQLHCVVKESRGALN---SVLQMIHGLSPKVLVMVEQDSGHNGPFFLGRFMESLHYYSAIFDSLDAMLPKYD 421
                     ******************************88877777...8***************************************************** PP

            GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                      +r+k+E++++++ei+n+v+ceg  r erhe++ +Wr+r+++aGF+ vp++  +++q k  l k k  dgy+v ee+g+lvlgWk++p+v++S+W
  XP_004515897.1 422 TKRAKMEQFYFAEEIKNIVSCEGPLRMERHEKVDQWRRRMSRAGFQGVPIK--MMSQGKEWLVKNKvCDGYTVVEEKGCLVLGWKSKPIVAASCW 514
                     *************************************************96..79999999999998**************************** PP

            GRAS 374 r 374
                     +
  XP_004515897.1 515 K 515
                     8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.036120496IPR005202Transcription factor GRAS
PfamPF035144.8E-110146515IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MSPSLYNPTF KNELVEYNNI NDQNENPLMG SCYALYPNFP ILENIANSTW ILPFPFSSSD  60
HETETIHNRD HKKLKRTITT TTTTNFHNSS VNSIPRLHFR DHIRTYKQRY FAAEAVEEAA  120
QEHLKFIDNN PDDFEEDGGC ADGMRLVQLL IACAEAVACR DKSHASILLS ELKSNALVFG  180
SSFQRVASCF VQGLTERLTM IQPIGSVTKS MMNIMDAASE EMEEAFKLVY EICPHIQFGH  240
FVANSIILEA FEGESFVHVV DLGMSLGLPH GHQWRGLIRS LASRSSQRVR RLRITGVGLC  300
IARIQVIGEE LSVYANNLGI HLEFSIVDKN LENLKPEDIK VNEKEVLVVN SILQLHCVVK  360
ESRGALNSVL QMIHGLSPKV LVMVEQDSGH NGPFFLGRFM ESLHYYSAIF DSLDAMLPKY  420
DTKRAKMEQF YFAEEIKNIV SCEGPLRMER HEKVDQWRRR MSRAGFQGVP IKMMSQGKEW  480
LVKNKVCDGY TVVEEKGCLV LGWKSKPIVA ASCWKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6115351426378Protein SCARECROW
5b3h_A2e-6115351425377Protein SCARECROW
5b3h_D2e-6115351425377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004515897.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004515897.10.0DELLA protein RGL1-like
TrEMBLA0A1S2Z6G20.0A0A1S2Z6G2_CICAR; DELLA protein RGL1-like
STRINGXP_004515897.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87302945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.14e-78RGA-like 1