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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_004515897.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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| Family | GRAS | ||||||||
| Protein Properties | Length: 516aa MW: 58518.2 Da PI: 6.8163 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 367.9 | 1.4e-112 | 146 | 515 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfs 94
lv+lL++cAeav+ +d++ a+ lL++l+ +a g+++qR+a++f+++L +rl+ + + + ++ + + s+e a+kl +e++P ++f+
XP_004515897.1 146 LVQLLIACAEAVACRDKSHASILLSELKSNALVFGSSFQRVASCFVQGLTERLTMIQ-PIGSVTkSMMNIMDAASEEMEEAFKLVYEICPHIQFG 239
689**************************************************9843.33333313333333348888899************** PP
GRAS 95 hltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
h++aN+ Ilea+ege+ vH++D+++s +G QW L+++LasR+ + +lRiTgvg +++ +ge L+ +A++lg+++ef++ v k
XP_004515897.1 240 HFVANSIILEAFEGESFVHVVDLGMSlglpHGHQWRGLIRSLASRSsQRVRRLRITGVGL----CIARIQVIGEELSVYANNLGIHLEFSI-VDK 329
**********************99874444678*************55566*********....**************************9.79* PP
GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
+le+l++e+++v+++E+l+Vn++lqlh +++es + +vL+++ +lsPkv+v+veq++ hn++ Fl rf+e+l+yysa+fdsl+a lp+ +
XP_004515897.1 330 NLENLKPEDIKVNEKEVLVVNSILQLHCVVKESRGALN---SVLQMIHGLSPKVLVMVEQDSGHNGPFFLGRFMESLHYYSAIFDSLDAMLPKYD 421
******************************88877777...8***************************************************** PP
GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
+r+k+E++++++ei+n+v+ceg r erhe++ +Wr+r+++aGF+ vp++ +++q k l k k dgy+v ee+g+lvlgWk++p+v++S+W
XP_004515897.1 422 TKRAKMEQFYFAEEIKNIVSCEGPLRMERHEKVDQWRRRMSRAGFQGVPIK--MMSQGKEWLVKNKvCDGYTVVEEKGCLVLGWKSKPIVAASCW 514
*************************************************96..79999999999998**************************** PP
GRAS 374 r 374
+
XP_004515897.1 515 K 515
8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 56.036 | 120 | 496 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 4.8E-110 | 146 | 515 | IPR005202 | Transcription factor GRAS |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 516 aa Download sequence Send to blast |
MSPSLYNPTF KNELVEYNNI NDQNENPLMG SCYALYPNFP ILENIANSTW ILPFPFSSSD 60 HETETIHNRD HKKLKRTITT TTTTNFHNSS VNSIPRLHFR DHIRTYKQRY FAAEAVEEAA 120 QEHLKFIDNN PDDFEEDGGC ADGMRLVQLL IACAEAVACR DKSHASILLS ELKSNALVFG 180 SSFQRVASCF VQGLTERLTM IQPIGSVTKS MMNIMDAASE EMEEAFKLVY EICPHIQFGH 240 FVANSIILEA FEGESFVHVV DLGMSLGLPH GHQWRGLIRS LASRSSQRVR RLRITGVGLC 300 IARIQVIGEE LSVYANNLGI HLEFSIVDKN LENLKPEDIK VNEKEVLVVN SILQLHCVVK 360 ESRGALNSVL QMIHGLSPKV LVMVEQDSGH NGPFFLGRFM ESLHYYSAIF DSLDAMLPKY 420 DTKRAKMEQF YFAEEIKNIV SCEGPLRMER HEKVDQWRRR MSRAGFQGVP IKMMSQGKEW 480 LVKNKVCDGY TVVEEKGCLV LGWKSKPIVA ASCWKC |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5b3g_A | 2e-61 | 153 | 514 | 26 | 378 | Protein SCARECROW |
| 5b3h_A | 2e-61 | 153 | 514 | 25 | 377 | Protein SCARECROW |
| 5b3h_D | 2e-61 | 153 | 514 | 25 | 377 | Protein SCARECROW |
| Search in ModeBase | ||||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | XP_004515897.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_004515897.1 | 0.0 | DELLA protein RGL1-like | ||||
| TrEMBL | A0A1S2Z6G2 | 0.0 | A0A1S2Z6G2_CICAR; DELLA protein RGL1-like | ||||
| STRING | XP_004515897.1 | 0.0 | (Cicer arietinum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF8730 | 29 | 45 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G66350.1 | 4e-78 | RGA-like 1 | ||||




