PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004516162.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family FAR1
Protein Properties Length: 233aa    MW: 27153.6 Da    PI: 4.8973
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004516162.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR123.91.4e-074387247
            FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47
                     Y+eYA++ GF  ++++s+ks ++ge     + Cs+eg++ ++k  
  XP_004516162.1 43 IYEEYASRKGFGWKIRSSRKS-QDGELCYLILSCSREGSKVSKKLC 87
                    6******************99.8888************99887755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.2E-54387IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MDCGTIEDEG IRVDNLDDDD DNTCCWEPTT GMCFSCLDEV KSIYEEYASR KGFGWKIRSS  60
RKSQDGELCY LILSCSREGS KVSKKLCTLE TLPTKTSPTK ARLFKANKTM NLHVKRTIQI  120
NDDAGVRINK TFQPLVKDAE GHENVTFWEK YVRNYVKVLI SYFCQMREQN SDFFYDIDLD  180
DDFHVRNVFW TNARNRVSYE YFGDVVTNFD TTYLTNKYDM PFVVFVCVSN LDV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004516162.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004516162.11e-174protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A1S2Z6Y51e-173A0A1S2Z6Y5_CICAR; protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_004516162.11e-174(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.25e-15far-red elongated hypocotyls 3