PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004516271.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family FAR1
Protein Properties Length: 166aa    MW: 18968.1 Da    PI: 9.9353
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004516271.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR150.66.3e-1619104190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +fY+eY ++ GF  ++++skk  ++ge     + Cs+eg++ ++      + +t +++  +C ak+++k++kdg w++tk+e +H+He +
  XP_004516271.1  19 SFYEEYVSRKGFGWKIRSSKKG-QDGELCYLILSCSREGSKVSKIVC---TLKTLPTKVNNCPAKIVIKLDKDGLWHITKFEPDHTHETS 104
                     5****************99987.8899*************9998766...899999999****************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-1319104IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MLLGACNRDV FSCLNEVKSF YEEYVSRKGF GWKIRSSKKG QDGELCYLIL SCSREGSKVS  60
KIVCTLKTLP TKVNNCPAKI VIKLDKDGLW HITKFEPDHT HETSPTKARL FKANKKMKLH  120
VKRTIQINDD VGVRINKTIQ PLVKDAGGHE NIPFCERDVR NYVNKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004516271.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004516271.11e-121protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A1S2Z7771e-120A0A1S2Z777_CICAR; protein FAR-RED IMPAIRED RESPONSE 1-like
STRINGXP_004516271.11e-121(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.14e-13FAR1 family protein