PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004516354.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 181aa    MW: 20955.8 Da    PI: 10.4686
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004516354.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-051738223
                    EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                    +C++C+ksFs+   L  H+++H
  XP_004516354.1 17 VCTICNKSFSNGKALGGHMKSH 38
                    6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.05E-51543No hitNo description
PROSITE profilePS5015710.7411643IPR007087Zinc finger, C2H2
PfamPF139125.1E-101640IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.9E-41739IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002801838IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MVEIRELSPT MENNSRVCTI CNKSFSNGKA LGGHMKSHLA KLPVPPKPPN NSQVIEYSLE  60
STKRPTHSFS SSSSSSSHSR NNPMHNLRSL KRNFYYTLAN FGRNSFFESC PKNPTRKRSK  120
RHRKQFKLAT EKRESTQYRL MYDEFDIEAA KTLVIISMKE WQQIEEKYNK EMAKVNGNES  180
T
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004516354.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004516354.11e-133zinc finger protein ZAT1-like
TrEMBLA0A1S2Z7D61e-131A0A1S2Z7D6_CICAR; zinc finger protein ZAT1-like
STRINGXP_004516354.11e-132(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1731457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.14e-09C2H2-like zinc finger protein