PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004516766.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 233aa    MW: 27056.3 Da    PI: 7.3413
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004516766.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.7e-174087148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l+++++ +G g W++ a+  g++Rt+k+c+ rw++yl
   XP_004516766.1 40 KGPWTMEEDLILINYIANHGEGVWNSLAKSAGLKRTGKSCRFRWLNYL 87
                     79********************************************97 PP
2Myb_DNA-binding55.21.6e-1793136146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++
   XP_004516766.1  93 RGNITPEEQLLIMKLHAKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 136
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-233390IPR009057Homeodomain-like
PROSITE profilePS5129417.2653587IPR017930Myb domain
SuperFamilySSF466894.12E-3037134IPR009057Homeodomain-like
SMARTSM007172.4E-123989IPR001005SANT/Myb domain
PfamPF002497.3E-164087IPR001005SANT/Myb domain
CDDcd001673.88E-104287No hitNo description
PROSITE profilePS5129426.06888142IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.3E-2591142IPR009057Homeodomain-like
SMARTSM007171.9E-1592140IPR001005SANT/Myb domain
PfamPF002492.7E-1693136IPR001005SANT/Myb domain
CDDcd001671.04E-1297136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MCIHEHMSSF MYFSHSLSLS YKIMDKNKEC NSSQDPDVRK GPWTMEEDLI LINYIANHGE  60
GVWNSLAKSA GLKRTGKSCR FRWLNYLRPD IRRGNITPEE QLLIMKLHAK WGNRWSKIAK  120
HLPGRTDNEI KNYWRTRIQK HIKQAENSQQ QNCDQINDNN NQIASSSQVS NMAPEPMDIS  180
PPCYQGGILE PFSSHDHHHH FPTISDQSSC CTNDNNNYWS MEDFLSMQLL NGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26361423108B-MYB
1h8a_C5e-263514222128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004516766.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004516766.11e-176myb-related protein 305-like isoform X2
SwissprotP813917e-89MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A1S2Z8491e-175A0A1S2Z849_CICAR; myb-related protein 305-like isoform X2
STRINGXP_004516765.11e-164(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.12e-78myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]