PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004517294.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GRAS
Protein Properties Length: 479aa    MW: 54043.9 Da    PI: 5.6621
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004517294.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS457.48.8e-140524761374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl+cA++v+sg+le+a+++L+++s+laspdgd+mqR+ ayfteALa r+++++++l +al++++      see+ + k+f+e++P+lk+++
  XP_004517294.1  52 LIHLLLTCANHVASGNLENANTTLEQISQLASPDGDTMQRISAYFTEALADRILKTWPGLHRALNSTRII--LLSEEILVKKFFFELFPFLKVAY 144
                     689*************************************************************988886..69********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +++NqaI+ea+ege++vH+iD+++ +++QW+aLlq L++R+egpp+lRiTg+++    +ke l +++++L++ Ae+l++pf+fn+ v+++le+l+
  XP_004517294.1 145 ILTNQAIVEAMEGEKMVHVIDLNAAEPAQWIALLQVLSARSEGPPHLRITGIHQ----QKEILDQMAHKLSEEAEKLDIPFQFNP-VVSKLENLD 234
                     ******************************************************....9**************************.799****** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll............................................................desvsleserd 225
                     +++Lrvk+gEala++++lqlh+ll                                                            ++++s++  ++
  XP_004517294.1 235 FDKLRVKTGEALAISSILQLHSLLalddesssrrkttplfsrnsnglhlqkallmnqntlgdflekdmvngyspspdsgssspaSSTASMN--IE 327
                     *******************************************************************************998744444444..59 PP

            GRAS 226 evLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerle 320
                     ++L++++slsPkv+vv+eq+++hn+++++er+leal+ y+a+fd+le++++r+s er kvE++l+g+ei+n++aceg er+erhe+l kW +rl+
  XP_004517294.1 328 SFLNALWSLSPKVMVVTEQDSNHNGSTLMERLLEALYSYAAFFDCLESTVSRTSLERLKVEKMLFGEEIKNIIACEGVERKERHEKLDKWFMRLD 422
                     9********************************************************************************************** PP

            GRAS 321 eaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +GF++vpls++ + qa++ l+ ++ +gyr+ ee+g++v +W+dr+L+s++aWr
  XP_004517294.1 423 LCGFGNVPLSYYGMLQARRFLQSYGCEGYRMREENGCIVTCWQDRSLFSTTAWR 476
                     *****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.71626456IPR005202Transcription factor GRAS
PfamPF035143.1E-13752476IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MESMFQEEGS SSVTCSPLQL FSMMSLSPSI GIGSPYPWLS RELKSEERGL YLIHLLLTCA  60
NHVASGNLEN ANTTLEQISQ LASPDGDTMQ RISAYFTEAL ADRILKTWPG LHRALNSTRI  120
ILLSEEILVK KFFFELFPFL KVAYILTNQA IVEAMEGEKM VHVIDLNAAE PAQWIALLQV  180
LSARSEGPPH LRITGIHQQK EILDQMAHKL SEEAEKLDIP FQFNPVVSKL ENLDFDKLRV  240
KTGEALAISS ILQLHSLLAL DDESSSRRKT TPLFSRNSNG LHLQKALLMN QNTLGDFLEK  300
DMVNGYSPSP DSGSSSPASS TASMNIESFL NALWSLSPKV MVVTEQDSNH NGSTLMERLL  360
EALYSYAAFF DCLESTVSRT SLERLKVEKM LFGEEIKNII ACEGVERKER HEKLDKWFMR  420
LDLCGFGNVP LSYYGMLQAR RFLQSYGCEG YRMREENGCI VTCWQDRSLF STTAWRPRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-604447811381Protein SCARECROW
5b3h_A5e-604447810380Protein SCARECROW
5b3h_D5e-604447810380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004517294.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2335690.0AC233569.4 Medicago truncatula clone mth2-73i21, complete sequence.
GenBankCR9550080.0CR955008.2 Medicago truncatula chromosome 5 clone mte1-51b2, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004517294.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A1S2Z9740.0A0A1S2Z974_CICAR; scarecrow-like protein 3
STRINGXP_004517294.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]