PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008218226.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GeBP
Protein Properties Length: 416aa    MW: 45245.8 Da    PI: 4.8505
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008218226.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57375.68.8e-241472182797
          DUF573  27 gk.spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                     g+ + ++d+  fy+++k++++++++k+qlveK+rrLKkK+++  +k++sgke+sf+++hdq +fe+s+kiW 
  XP_008218226.1 147 GShHGQNDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVLNKIASGKEVSFKSPHDQATFEISRKIWS 218
                     5523355****************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.4E-22149218IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MAPDQDDAVL PEGDLSSSSQ DDEEEDDVVD DDEEEDDVDD DDDVLNDDVI NSASPSTSSA  60
GATDSLPVAI ATPTVTVALP ARDPPPLALA TTTSTATTVI ANDAVLSSDP KRHAVLSPQP  120
EEKKPAALAD SRRLSQRRWN RRHGNKGSHH GQNDTALFYD QIKSKLQLDF NKNQLVEKLR  180
RLKKKYRNVL NKIASGKEVS FKSPHDQATF EISRKIWSNI GRIGPDDNAL DDEDPSPNPN  240
NPNFNNYEIK NEEAAGFAGD KKSTPRSRKR SRTQLRAEEK PPPSRGGFVE PSLVIKDNNN  300
SINNSNHGGG GNSCSNCNVH GLIEETVKSC LSPLFKELLS SAMGGGSARG FGGLSLNPIP  360
LSFGGPSMNL NFGGGEGADE KWRKQQILEL EVYSKRLELV QNQIKVALEE LRSSRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008218226.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008218226.10.0PREDICTED: rRNA biogenesis protein rrp36
TrEMBLA0A314YY090.0A0A314YY09_PRUYE; Putative transcription factor
STRINGXP_008218226.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32553365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.12e-53DNA-binding storekeeper protein-related transcriptional regulator