PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008218241.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 677aa    MW: 76337.7 Da    PI: 6.5837
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008218241.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.52.2e-15149208266
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 
                     W+++e laL+++r+ m++++ +       We+vs+k++e gf+rs+++Ckek+e+ ++++ +i+ 
  XP_008218241.1 149 WSNDELLALLRIRSTMDNWFPEF-----TWEHVSRKLAELGFKRSAEKCKEKFEEESRYFNNINF 208
                     ********************998.....9*******************************99875 PP
2trihelix97.41.3e-30505594186
        trihelix   1 rWtkqevlaLiearremeerlrrgk.....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW+++evlaLi++r ++ ++ ++++      k+plWe++s+ m e+g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql 
  XP_008218241.1 505 RWPRDEVLALINLRCSLFNNGSADQdkngvVKAPLWERISQGMLEKGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SLDSRTCPYFHQLS 594
                     8********************9865556669********************************************8.9999********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.5145202IPR001005SANT/Myb domain
PfamPF138374.9E-10147209No hitNo description
PROSITE profilePS500906.377148200IPR017877Myb-like domain
SMARTSM007170.24502569IPR001005SANT/Myb domain
CDDcd122032.32E-24504574No hitNo description
PfamPF138371.1E-18504594No hitNo description
PROSITE profilePS500906.47505567IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MFDGVPAEQL HQFIAASRTS LPLPLPLPLP LPSFPAALHA SSSPPPNINT FSAVAAAAAP  60
FDPNYNNNPS HHHLHHHHQL LLQPQPQPQP QPHQHQLLNN PGVQLHRQSA TPKNHEEKKE  120
SNLVSINNNL EIERERSSSI SQVPISDPWS NDELLALLRI RSTMDNWFPE FTWEHVSRKL  180
AELGFKRSAE KCKEKFEEES RYFNNINFTK NYRFLSDLEE LCHGGDDDQN PDQAAAGAEN  240
KNQQKVEKPS NNEGDEDNRC QILDEDSTRN ETVVGSKEFD DQDKEKEVVE RTKSNVVRKR  300
KRKRRFEMLK GFCEDIVNRM MAQQEEMHSK LLEDMVKRSE EKLAREEAWK KQEMDRMNKE  360
LEIMAHEQAI AGDRQATIIK FLKKFASSSS SSTSSEPSPD HDRRTNSSSL INQARNPNLP  420
TCSQEKEPTS STIIQKPGTS SHTPNNPSTP ISLTETTAPQ SPSSSTLAPT PTIPKVPIPP  480
ENPSSDHLNT QNPTSNDDKQ DLGKRWPRDE VLALINLRCS LFNNGSADQD KNGVVKAPLW  540
ERISQGMLEK GYKRSAKRCK EKWENINKYF RKTKDVNKKR SLDSRTCPYF HQLSTLYNQG  600
ILVPPSDHIQ GPDHQTSSAS PENQSLASPV VAQTGLDSSD QGRSSADDDL SKHNIIGEGE  660
KNNTVQPVPA AAFDFEF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1298304KRKRKRR
2299304RKRKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008218241.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008218241.10.0PREDICTED: trihelix transcription factor GTL2
SwissprotQ8H1811e-106GTL2_ARATH; Trihelix transcription factor GTL2
TrEMBLM5W7S80.0M5W7S8_PRUPE; Uncharacterized protein
STRINGXP_008218241.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.11e-103Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]