PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008218478.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 250aa MW: 27952.5 Da PI: 8.7994

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008218478.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	87.9	1.5e-27	80	168	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA ++GF++r++ ++s+ +g+i+ rt+vC+keg+r +k++ + + r+r+ tr+gCka++ vkk + gkw+v+k+++eH+H+l+p XP_008218478.1 80 FYNAYALRIGFRTRVNDLSRSRVDGSIIARTLVCNKEGYRVADKRE-RMSVRPRPPTRVGCKAMISVKKLSIGKWVVAKFVKEHTHTLSP 168 ****************************************9999.999***********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.1E-24	80	168	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MDSVFDTEAQ NGVLDNSADV ELRLNHDGAI LATCVVEEGS SLGQIEQVGQ NSSRVEQNAV 60 EGDEPYLGQE FDSEAAAHAF YNAYALRIGF RTRVNDLSRS RVDGSIIART LVCNKEGYRV 120 ADKRERMSVR PRPPTRVGCK AMISVKKLSI GKWVVAKFVK EHTHTLSPGK GKKGSNDPST 180 TDEQMKIKEL TQQLLVERKR SASYRKIIDL LFNHIEEHTQ NLSQKIQRIT DNLQEIVSSE 240 GKGKDRRNAP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008218478.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008218478.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A251P0W7	0.0	A0A251P0W7_PRUPE; Uncharacterized protein
STRING	XP_008218478.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	2e-60	FAR1 family protein