PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008218499.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family CPP
Protein Properties Length: 753aa    MW: 82226.8 Da    PI: 6.3017
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008218499.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR47.53.7e-15485521339
             TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                     +k+CnCk+skClk+YC+Cfaag +C e C+C++C+Nk
  XP_008218499.1 485 CKRCNCKRSKCLKLYCDCFAAGLYCIEPCSCQECFNK 521
                     79**********************************8 PP
2TCR51.61.8e-16569608140
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     ++k+gCnC+ks ClkkYCeCf+ g+ Cs  C+C +CkN+ 
  XP_008218499.1 569 RHKRGCNCRKSGCLKKYCECFQGGAGCSILCRCIGCKNTF 608
                     589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.2E-16483524IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.8484609IPR005172CRC domain
PfamPF036387.6E-11486521IPR005172CRC domain
SMARTSM011141.6E-17569610IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.8E-12571607IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 753 aa     Download sequence    Send to blast
MDTPLKNQTT TPTTPLPSKY EDSPVFNYIS NLSPIEPVKS RGNDHTFNSL TFASLPPIFT  60
SPQNVSLGET RFSLRRHHSS EASNPESFQT PNPSDKLGSV PVAVEQSYFG TKQSECFTPG  120
SSGTEVTHAI PAENLELAIE LSNTLKYSSG SPDRNVPCDA TDTVLETAAT PASLVQSVVH  180
HSEERHSSFE RETHLRRICG MEHEKEAAGV DWTRLISDAS DLLNFDSTTI EESSDGEDPK  240
TVDPGAICFI SNILQDNHDD MEVMESGPID SSEQYALGKF SNQSEGIGDL KETDEAPAVL  300
SRNLLDKLNV DDKCPKCIHS SCTHNSQSYA ISRRCLNFER AETHKRKSIC DTSGSYSVPL  360
QSNCEVTLEK KLIRTTAGCD YSSSRLPGIG LHLNALATTS ESNLSKVVNH ETQASESQVT  420
ETPNSKISST CLTPSEVSRD ESCKSEVHIA ETPPEACAPV GVESDHSSPE NKRLKSQHVG  480
ESLACKRCNC KRSKCLKLYC DCFAAGLYCI EPCSCQECFN KPIYENIVVE TRRLIESRNP  540
LAFAPKVIGS INATPQFGEE TNSTPTSARH KRGCNCRKSG CLKKYCECFQ GGAGCSILCR  600
CIGCKNTFGR KDEAEESEIE EHKSRVRKKD ATDVSLGKVK DQDLPMTLPG ICRPSGQLTA  660
SFSGKPKIFS LHSVLSSPQP ERHLQVIPEE ETLEALDNSC SQPSGVKSTS PNSKRVSPPH  720
SGSEFGSAAW RGGRKLVLRS IPPFPTLAPP RKH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A8e-1848860614120Protein lin-54 homolog
5fd3_B8e-1848860614120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008218499.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008218499.10.0PREDICTED: CRC domain-containing protein TSO1
TrEMBLA0A251NZQ10.0A0A251NZQ1_PRUPE; Uncharacterized protein
STRINGXP_008218499.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.11e-103Tesmin/TSO1-like CXC domain-containing protein