PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008218539.2
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family AP2
Protein Properties Length: 754aa    MW: 82638.8 Da    PI: 7.1197
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008218539.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.59.4e-15241300155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_008218539.2 241 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 300
                     57*******************666664478446*************************98 PP
2AP246.68.8e-15343394155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_008218539.2 343 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 394
                     57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.73E-17241310IPR016177DNA-binding domain
CDDcd000187.10E-22241310No hitNo description
PfamPF008471.4E-11241300IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-15242309IPR001471AP2/ERF domain
PROSITE profilePS5103219.164242308IPR001471AP2/ERF domain
SMARTSM003802.0E-29242314IPR001471AP2/ERF domain
PRINTSPR003675.3E-6243254IPR001471AP2/ERF domain
CDDcd000184.46E-24343402No hitNo description
SuperFamilySSF541711.77E-17343403IPR016177DNA-binding domain
PfamPF008471.1E-9343394IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-18344402IPR001471AP2/ERF domain
SMARTSM003802.4E-33344408IPR001471AP2/ERF domain
PROSITE profilePS5103219.045344402IPR001471AP2/ERF domain
PRINTSPR003675.3E-6384404IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 754 aa     Download sequence    Send to blast
MLHQAAAFNT TNIHSQGADW SNMNSSDSST YKTTSDHLSM LMGSNNSYRS QNLENHHQQP  60
KLENFLGRHS FVADEHHIGG QSSSSGTHVY NNNSTSSTST SSSNIGLSMI KTWLRNQPAP  120
VILPHHHDHH DHQQRINKND INTTDTTTTT SSSAVQTLSL SMSTGSHTHH NTTSAAAAAT  180
GETCSSDRDN TCNDNNKLAV VRTTTSTAPP PGIDSQTTST TATAIEAVPR KSVDTFGQRT  240
SIYRGVTRHR WTGRYEAHLW DNSCRREGQT RKGRQVYLGG YDKEEKAARA YDLAALKYWG  300
TTTTTNFPIS NYEKEIDEMK HMTRQEYVAS LRRKSSGFSR GASIYRGVTR HHQHGRWQAR  360
IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGLNAVTN FDMTRYDVKS ILDSSTLPIG  420
GAAKRLKDVE QAAQHQHHEM SLLVDGHNRS APTDDHHDKM MMMMMNGSTG TCHDQYHHQQ  480
QQQLIMGSGT AAADNYGSGT AGGWPTLAFN QSAAAAHHTP FGMHYYSSLV PYNNNSGQRV  540
WCKQEQEQDI HSNTAPQSFY HHHQHQQQQQ DQDQDLHHHQ LLQLGSSHNF FQATGMDSME  600
HSSGSNSVMY STATATNGGG GGGGDHGGYI IPMGTVISND HNNGFGDGTN HDHQVKAVAL  660
GFENVFGSTT TSANAANVTG DAYNNHARNL YYLPQHPPQS SSVSSVSSAG VAKGGSAYDI  720
HEAGQCNNWM PTAVPTSTNS NINMPPTFTV WNDT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008218539.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4296730.0KC429673.1 Rosa canina BBM1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008218539.20.0PREDICTED: AP2-like ethylene-responsive transcription factor BBM
SwissprotQ8LSN21e-137BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A251P0W50.0A0A251P0W5_PRUPE; Uncharacterized protein
STRINGXP_008218539.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81862840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-127AP2 family protein