PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008218670.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 683aa    MW: 78793.7 Da    PI: 7.8912
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008218670.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.62.7e-2063156190
            FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                     ++Y+e+Ak++GFs+r+++++ +    +  t+r fvC + g++  ++++++k +r+r+++r+gC+a ++++k++     +w+vt + ++HnHel 
  XP_008218670.1  63 EYYSEFAKQCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPIKTSHERKPQRNRKSSRCGCQAYMRISKTTelgAPEWRVTGFANHHNHELL 156
                     69*************9998877356667999*************99999999*******************99888889*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.7E-1763156IPR004330FAR1 DNA binding domain
PfamPF105513.9E-11279373IPR018289MULE transposase domain
PROSITE profilePS509669.681560593IPR007527Zinc finger, SWIM-type
PfamPF044349.1E-8564591IPR007527Zinc finger, SWIM-type
SMARTSM005754.1E-5568595IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MMSEDAGVML VVYDDPSDQR SLSLDETSST EESPDETRLS LETTNDVIPY IGQRFSTHDA  60
AYEYYSEFAK QCGFSIRRHR TEGKDGVGKG LTRRYFVCHR AGNTPIKTSH ERKPQRNRKS  120
SRCGCQAYMR ISKTTELGAP EWRVTGFANH HNHELLEANQ VRFLPAYRTI SEADKSRILM  180
FAKTGISVQQ MMRLMELEKC VQPGYLPFTE KDVRNLLQTF RKLDPEDESI DLLRMCRNIK  240
EKDPNFKFEY TLDSDHRLEN IAWSYASSVQ SYEIFGDAVV FDTTHRLTAF DMPLGIWVGI  300
NNYGMPCFFG CVLLREESLR SFSWALKVIE XLYTSLLPNL LWFSVLYGNM FLKEAISMEM  360
PTTKHALCIW MIVAKFPSWF NAVLGERYNE WKSEFYRIYN LESIEDFELG WRDLVNSFGL  420
HSNRHIVNLY GLRSLWALPF LRSHFFAGMT TIGQSKSINA FIQRFLSAQT RLAHFVEQVA  480
VAVDFKDQAG EQQTMQQNLQ NISLKTGAPM ESHAASTFTP YAFSKLQEQL VLAAHYASFE  540
MEDVFLVRHH TKAEGGRKVY WVPREGIISC SCHHFEFSGI LCRHALRVLS TGNCFQIPER  600
YLPVRWRRIS IPSAKLLQSA PSDHAERIQL LQNIVSTLVT ESAKSRERLD IATEQVSILL  660
SRIRERPVSV QSTREISSMH RNI
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008218670.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008218670.10.0PREDICTED: LOW QUALITY PROTEIN: protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A251RL310.0A0A251RL31_PRUPE; Uncharacterized protein
STRINGXP_008218670.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]