PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008218751.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TCP
Protein Properties Length: 603aa    MW: 62939.8 Da    PI: 8.6275
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008218751.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.13.8e-39204328495
             TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg......... 88 
                      k++++++hTkv+gR+RR+R++a+caar+F+L++eL +++d++tieWLlqqa+pai+++tgt++++a+++  + s +ss+s+ s++         
  XP_008218751.1 204 VKRSTKDRHTKVEGRGRRIRMPATCAARVFQLTRELSHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSsLNISLRSSGSTLSAPpsksashsf 298
                     589****************************************************************9998777777777755555555556667 PP

             TCP  89 .......................kaaksaa 95 
                                             ++++++
  XP_008218751.1 299 pgalalahhphydegfphsgllgFHQQQHH 328
                     777777777776655555555552222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.1E-39207337IPR005333Transcription factor, TCP
PROSITE profilePS5136927.234208262IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MDLSNFQSTN NNKKQQQQQQ QQSNTSNNNT SHHQLHQHLL HPHPHHHHQQ QPKQQQSSPS  60
SQFVVPFDGS RSSSGAGGGG GGGGPPFMGS ISIQAGLTST HTPTTTSATV SAQPPAPSSS  120
SLSSSSSSSP SSTSTSTAPP PHLVDASLAI ATRSDSHPST RPAPLLDSAK KNQIHQQQLT  180
ISPTSTTTAT PPAPPAAAAA TQVVKRSTKD RHTKVEGRGR RIRMPATCAA RVFQLTRELS  240
HKSDGETIEW LLQQAEPAII AATGTGTIPA NFSSLNISLR SSGSTLSAPP SKSASHSFPG  300
ALALAHHPHY DEGFPHSGLL GFHQQQHHHH HHQQHQSPLM TADQIAEALP SGGGDSGGGD  360
STDSYMRKRF REDLFKDDNQ GRGEGGGGSS GGGGSPSGNK AFKSSGGLQL QKQQQGSEGE  420
AGPSGLLRPT SNILPPTAMW AVAPAPNSGA AGSTFWMLPV TAGAGGPSMP TGTSGAGPSE  480
AAQMWTFPSA PASHGSTLQA PLHFMPRFNL PSSLEFQQAG SRGSPLQLGS MLMQQQPSQH  540
LGLGVADSNL GMLAALNASY SRGGLNMNSE HHQQNHPLDH HHQQQQHQPQ TTDSGDEAPN  600
SSQ
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008218751.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008218751.10.0PREDICTED: transcription factor TCP8
SwissprotQ9C5185e-83TCP8_ARATH; Transcription factor TCP8
TrEMBLA0A251RJT60.0A0A251RJT6_PRUPE; Uncharacterized protein
STRINGXP_008218751.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60773050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.18e-71TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]