PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008218757.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bZIP

Protein Properties

Length: 383aa MW: 43188.6 Da PI: 8.0258

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008218757.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	24.6	5.5e-08	243	289	17	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 A+rsR RK+++i+eLe+ v++L+ae + ele l+++ l +e+ XP_008218757.1 243 AQRSRVRKLQYIAELERNVQALQAEGSGVTAELEFLNQQNLILSMEN 289 89**********************************99998887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.0011	232	291	IPR004827	Basic-leucine zipper domain
CDD	cd14703	2.00E-14	235	282	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.0E-5	243	285	No hit	No description
SuperFamily	SSF57959	1.56E-5	243	285	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MANSKSSNIR NFMYSGKHPL LPPKSPFPSV SPSYADYVLS PAFGSKTVQK PREGNAHHQR 60 TSSESLLIEE QPSWLDDLLN EPDTPIRRGG HRRSSSDSFA YVDASNASNI DYAAQDEYKY 120 HHMISAPSWG SQDFDPQKDL RHASLYTELN LVKQKNKAWE SSLNSVNNMS SLPSVKDNIV 180 LQSSGSLSTP QEADGFASTA SERQDQVESG PHDPKASSEK KDNSNAKLYA SETDAKRAKQ 240 QFAQRSRVRK LQYIAELERN VQALQAEGSG VTAELEFLNQ QNLILSMENK ALKQRLESIA 300 QEQLIKYLEQ ELLEREIGRL RALYQQQQQH HQQQQQQQQQ QQQPSSSHRR SNSKDLDSQF 360 ANLSLKHKDA NAGRDPVTGT LRI

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MANSKSSNIR NFMYSGKHPL LPPKSPFPSV SPSYADYVLS PAFGSKTVQK PREGNAHHQR  60
TSSESLLIEE QPSWLDDLLN EPDTPIRRGG HRRSSSDSFA YVDASNASNI DYAAQDEYKY  120
HHMISAPSWG SQDFDPQKDL RHASLYTELN LVKQKNKAWE SSLNSVNNMS SLPSVKDNIV  180
LQSSGSLSTP QEADGFASTA SERQDQVESG PHDPKASSEK KDNSNAKLYA SETDAKRAKQ  240
QFAQRSRVRK LQYIAELERN VQALQAEGSG VTAELEFLNQ QNLILSMENK ALKQRLESIA  300
QEQLIKYLEQ ELLEREIGRL RALYQQQQQH HQQQQQQQQQ QQQPSSSHRR SNSKDLDSQF  360
ANLSLKHKDA NAGRDPVTGT LRI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008218757.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008218757.1	0.0	PREDICTED: uncharacterized protein At4g06598
Swissprot	Q8W3M7	6e-64	Y4598_ARATH; Uncharacterized protein At4g06598
TrEMBL	A0A314Y9N1	0.0	A0A314Y9N1_PRUYE; Uncharacterized protein
STRING	XP_008218757.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5123	26	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58110.2	1e-101	bZIP family protein

Publications ? help Back to Top
Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4. DNA Res., 2001. 8(6): p. 285-90 [PMID:11853315]