PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008219008.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 227aa    MW: 24472 Da    PI: 5.1946
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008219008.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88.4e-13163208655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L++l+P+     +k  + a++L +AveY+k Lq
  XP_008219008.1 163 SIAERVRRTRISDRIRKLQDLVPNM----DKQTNTADMLDEAVEYVKFLQ 208
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.958157207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-17160222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.47E-13161212No hitNo description
Gene3DG3DSA:4.10.280.103.0E-17162220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-10163208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-13163213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MQRAAGGSSS GGGEVSRGGG LGRFCSAPAT WLEALLEEEE EDPLXPTQCL TELLAENTGA  60
TSVGFGSTTV DPVSYEAAAA AGFLSRQNSS PAEFLGSSND GSEGYFSGFG IPAHLDFVSL  120
SPNSSSPSAN KRVREVKLEE GGLEDAVPCR VRAKRGCATH PRSIAERVRR TRISDRIRKL  180
QDLVPNMDKQ TNTADMLDEA VEYVKFLQKQ IQELSEHQRR CKCIAKE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008219008.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008219008.11e-166PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH80
SwissprotQ9C8P85e-72BH080_ARATH; Transcription factor bHLH80
TrEMBLM5Y3751e-164M5Y375_PRUPE; Uncharacterized protein
STRINGXP_008219008.11e-165(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91323043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.13e-59bHLH family protein