PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008219057.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 222aa    MW: 25593.3 Da    PI: 9.7999
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008219057.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.11.8e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++nrqvtf+kRrng+lKKA+ELS+LCdaeva+i+fss+g+lyeys+
  XP_008219057.1  9 KRIENTTNRQVTFCKRRNGLLKKAYELSILCDAEVALIVFSSRGRLYEYSN 59
                    79***********************************************95 PP
2K-box110.42e-36791745100
           K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      ++s +e +a+++qqe+akL+++i++Lq+++Rhl+G+ L++Ls+keL+qLe++Le+++++iRskK+e+ll++ie+lqkke el++en +Lr+k+ 
  XP_008219057.1  79 GSTSITEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLSVKELKQLENRLERGINRIRSKKHEMLLAEIEYLQKKEIELENENVCLRTKIS 173
                     34558999*************************************************************************************97 PP

           K-box 100 e 100
                     e
  XP_008219057.1 174 E 174
                     6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.1E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.936161IPR002100Transcription factor, MADS-box
CDDcd002652.62E-42277No hitNo description
SuperFamilySSF554552.35E-32275IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-33323IPR002100Transcription factor, MADS-box
PfamPF003198.3E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-333859IPR002100Transcription factor, MADS-box
PfamPF014861.0E-2787172IPR002487Transcription factor, K-box
PROSITE profilePS5129716.10888178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSILCD AEVALIVFSS RGRLYEYSNN  60
NSIRNTIERY KKACSDSSGS TSITEINAQY YQQESAKLRQ QIQMLQNSNR HLMGDALSTL  120
SVKELKQLEN RLERGINRIR SKKHEMLLAE IEYLQKKEIE LENENVCLRT KISEVERLQQ  180
ANMVGPELNA IQALASRNFF SQTMMEGGAT YPQQDKKILH LG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-20161161Myocyte-specific enhancer factor 2B
1tqe_Q4e-20161161Myocyte-specific enhancer factor 2B
1tqe_R4e-20161161Myocyte-specific enhancer factor 2B
1tqe_S4e-20161161Myocyte-specific enhancer factor 2B
6c9l_A4e-20161161Myocyte-specific enhancer factor 2B
6c9l_B4e-20161161Myocyte-specific enhancer factor 2B
6c9l_C4e-20161161Myocyte-specific enhancer factor 2B
6c9l_D4e-20161161Myocyte-specific enhancer factor 2B
6c9l_E4e-20161161Myocyte-specific enhancer factor 2B
6c9l_F4e-20161161Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in seed development (PubMed:21447172, Ref.1, PubMed:29853599). Plays a role in seed morphogenesis by promoting the correct development of endotesta cell layer, which directs the further development of the seed coat, the endosperm, and consequently the embryo (Ref.1, PubMed:29853599). {ECO:0000269|PubMed:21447172, ECO:0000269|PubMed:29853599, ECO:0000269|Ref.1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008219057.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6020370.0EF602037.1 Prunus persica SEEDSTICK-like protein (STK) mRNA, complete cds.
GenBankGU3325040.0GU332504.1 Prunus serrulata var. lannesiana SEEDSTICK-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008219057.11e-162PREDICTED: agamous-like MADS-box protein AGL11 isoform X1
RefseqXP_016647215.11e-162PREDICTED: agamous-like MADS-box protein AGL11 isoform X2
SwissprotF6I4571e-131AG11C_VITVI; Agamous-like MADS-box protein AGL11
TrEMBLD5JGT21e-159D5JGT2_9ROSA; SEEDSTICK-like protein
TrEMBLM5Y0I11e-159M5Y0I1_PRUPE; Uncharacterized protein
STRINGXP_008219057.11e-161(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.11e-119MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Mejía N, et al.
    Molecular, genetic and transcriptional evidence for a role of VvAGL11 in stenospermocarpic seedlessness in grapevine.
    BMC Plant Biol., 2011. 11: p. 57
    [PMID:21447172]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]
  5. Malabarba J, et al.
    The MADS-box gene Agamous-like 11 is essential for seed morphogenesis in grapevine.
    J. Exp. Bot., 2017. 68(7): p. 1493-1506
    [PMID:28369525]
  6. Royo C, et al.
    The Major Origin of Seedless Grapes Is Associated with a Missense Mutation in the MADS-Box Gene VviAGL11.
    Plant Physiol., 2018. 177(3): p. 1234-1253
    [PMID:29853599]