PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008219193.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 231aa    MW: 26254.9 Da    PI: 10.1027
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008219193.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF854.5e-271059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n++ rqvtfskRrng+lKKA+EL +LCdaev v+ifsstgkly+++s
  XP_008219193.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFAS 59
                    8***********************************************86 PP
2K-box86.55.3e-2981169997
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     + +++ + +q+e+a L+++++nLq+++R+++Ge+L+ Ls+k+Lq+Le+qLe sl+ +R+kK++ll+++i+el +k + +++en +L kk
  XP_008219193.1  81 NPTSEIKLWQREAAMLRQQLQNLQENHRQMMGEELSGLSVKDLQNLENQLEMSLRGVRTKKDQLLMDEIQELNRKGNLIHQENVELYKK 169
                     56788999*****************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.511161IPR002100Transcription factor, MADS-box
CDDcd002656.76E-45278No hitNo description
SuperFamilySSF554551.57E-31291IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-28323IPR002100Transcription factor, MADS-box
PfamPF003197.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.0E-2785169IPR002487Transcription factor, K-box
PROSITE profilePS5129715.81986176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010440Biological Processstomatal lineage progression
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVMIFSS TGKLYDFAST  60
SIKSVIERYN KAKEEHHQFG NPTSEIKLWQ REAAMLRQQL QNLQENHRQM MGEELSGLSV  120
KDLQNLENQL EMSLRGVRTK KDQLLMDEIQ ELNRKGNLIH QENVELYKKK SFTSQVYGTR  180
DVNGANRNPL LINGLGIGED SHGPVQLQLS QPQQQNCETA GRATKLGLQL H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-21181181MEF2C
5f28_B8e-21181181MEF2C
5f28_C8e-21181181MEF2C
5f28_D8e-21181181MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00410DAPTransfer from AT3G57230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008219193.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008219193.11e-170PREDICTED: MADS-box transcription factor 23 isoform X2
SwissprotQ6EP491e-104MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A314UEA91e-148A0A314UEA9_PRUYE; MADS-box transcription factor 23 isoform X1
STRINGXP_008219192.11e-154(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.14e-98AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]