PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008219237.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GATA
Protein Properties Length: 353aa    MW: 38357.5 Da    PI: 4.5605
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008219237.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.74.9e-16207243135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  XP_008219237.1 207 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 243
                     *******99*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009794.2E-767102IPR010399Tify domain
PROSITE profilePS5132012.94267102IPR010399Tify domain
PfamPF062003.5E-1070101IPR010399Tify domain
PROSITE profilePS5101712.58135177IPR010402CCT domain
PfamPF062031.0E-14135176IPR010402CCT domain
SMARTSM004011.1E-8201254IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.524201249IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.71E-11202251No hitNo description
Gene3DG3DSA:3.30.50.101.3E-14205248IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.67E-16206250No hitNo description
PfamPF003206.8E-14207243IPR000679Zinc finger, GATA-type
PROSITE patternPS003440207234IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MAAVNPQPLQ ARPFEEHGRG PIPIEDDEAE YEDGGDDGME DMEEVHVNSV SVAERGGGGG  60
GGGGVVMASR TSELTLSFEG EVYVFPAVTP EKVQAVLLLL GGRDVPTGVP TVEVSYDQNT  120
RGVADTPKRS NLSRRIASLV RFREKRKERC FDKKIRYTVR KEVAQRMLRK NGQFASLKQN  180
SGDSGWDSAQ SGLQDGTSRP ETVLRRCQHC GVSENNTPAM RRGPAGPRTL CNACGLMWAN  240
KGTLRDLSKG GRNLTMDHIE PGTPIEVKPL LVEGEFSGNQ DEHGTLEGPS KTVIERSNDA  300
SVNLDEQDLH ETAEDLTNSL PMGIVSSAND EQEPLVELTN PSDTDLDIPT NFD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124129DTPKRS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008219237.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008219237.10.0PREDICTED: GATA transcription factor 24-like
SwissprotQ8GXL73e-73GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A251RHF60.0A0A251RHF6_PRUPE; Uncharacterized protein
STRINGXP_008219237.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.29e-76ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]