PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008219254.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 642aa    MW: 68372.8 Da    PI: 7.0783
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008219254.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding248.9e-08208252144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHH..HHTTTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIar..tmgkgRtlkqcksrw 44 
                      r++W++ Ed  l+ av++ G g+W+ I r    g  Rt+ q+  rw
   XP_008219254.1 208 RKKWSEAEDFELIAAVQKCGEGNWANILRadFKG-DRTAGQLSQRW 252
                      789************************8721344.78888887777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-12201257IPR009057Homeodomain-like
PROSITE profilePS5129415.474203260IPR017930Myb domain
SuperFamilySSF466891.08E-11204257IPR009057Homeodomain-like
SMARTSM007178.3E-9207258IPR001005SANT/Myb domain
PfamPF002492.6E-6208252IPR001005SANT/Myb domain
CDDcd116601.69E-13209257No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MVEKTKDPKK CSITEEDTAT LLQRYTATTV LALLQEVAHW PAAKIDWIRL VAKTSTGISN  60
AKEYQMLWRH LAYREALVDK FDNGSQPLDD DSDLEYELEA FPAVCGEAST EAAACVKVLI  120
ASGLPSDSSH RNGTTVEAPL TINIPNGQPS RTHENSEPTC SMQGKNITVP VSVKKQPLPA  180
ATMSSVATAD GGDANGSASN SMAPRKKRKK WSEAEDFELI AAVQKCGEGN WANILRADFK  240
GDRTAGQLSQ RWAIIKKRNQ ELNLRGNSSG KLSEAQLAAR HSLSVALNMP NLTAKTIGTA  300
GTNAHNKFAR EVATSNSLLT TGAKAEPQSQ QDLKPTKKPY QMELLGSTTK SRITSKNTLT  360
KPNCNDDDIV RAIAVAAGAR IASPSDAASL LKAAQAKNAV HIMPTGGSSI QSSLPRGMST  420
HSEPHPNLHM RTGLAGITLS TPPPTDVTPN AVHPGSSKAL PLMSQHTPTN GTLLSKQIKG  480
VSCSLDAKLP SKQVVRTEEG SVIAELGCTP IVLAQDEAVI SRNGQDEQVK DDKVDSPNQK  540
AELKILSTDA ENPVSSLNIE RDETHHKAVI SVQGEQRQSA KDNEVVCSLI GGGDPSAVDS  600
SEKPSTTEKQ TDLLGTVTDG CNGKHVLSKE EAGIKINGEH EG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205209KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008219254.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008219254.10.0PREDICTED: uncharacterized protein LOC103319487 isoform X1
TrEMBLA0A251RHU20.0A0A251RHU2_PRUPE; Uncharacterized protein
STRINGXP_008219254.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31223256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.21e-74MYB_related family protein