PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008219272.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 25516.5 Da    PI: 5.1385
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008219272.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.12.7e-241962851
                    HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rqvtfskRr gi+KKA ELSvLC+ evav+ifs tgkl++yss
  XP_008219272.1 19 ARQVTFSKRRRGIFKKAAELSVLCESEVAVVIFSATGKLFDYSS 62
                    69****************************************96 PP
2K-box37.31.1e-13871691294
           K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                      + +  +++  kL  e+e   r++R+++GedLe+L+l eL +Leq +e  l ++ ++K+el+++ i  l kk  el e n+++
  XP_008219272.1  87 LELQLENENRIKLSTELEVKNRQLRRMKGEDLEELDLDELLKLEQLVEATLVRVMETKEELIMSDIVALEKKGTELVEGNNQM 169
                     333334444558888888888********************************************************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.773464IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-32463IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-22626IPR002100Transcription factor, MADS-box
CDDcd002653.67E-32673No hitNo description
SuperFamilySSF554556.8E-27676IPR002100Transcription factor, MADS-box
PfamPF003192.7E-211960IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-222641IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-224162IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.40689182IPR002487Transcription factor, K-box
PfamPF014861.1E-1090169IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MVKMMREKIK IKKIDYLPAR QVTFSKRRRG IFKKAAELSV LCESEVAVVI FSATGKLFDY  60
SSSSIKDVIE RYKARTNGVE KSDEQSLELQ LENENRIKLS TELEVKNRQL RRMKGEDLEE  120
LDLDELLKLE QLVEATLVRV METKEELIMS DIVALEKKGT ELVEGNNQMV MLRDRMVMLS  180
KRSTGPALME PSDSATSTSC NSALSLSLED ECSDDAILSL KLGRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-16472169MEF2C
5f28_B5e-16472169MEF2C
5f28_C5e-16472169MEF2C
5f28_D5e-16472169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that mediates floral transition in response to vernalization. Promotes inflorescence fate in apical meristems. Acts in a dosage-dependent manner. Probably involved in the transduction of RLK-mediated signaling (e.g. IMK3 pathway). Together with AP1 and SVP, controls the identity of the floral meristem and regulates expression of class B, C and E genes. When associated with SOC1, mediates effect of gibberellins on flowering under short-day conditions, and regulates the expression of LEAFY (LFY), which links floral induction and floral development. Confers inflorescence characteristics to floral primordia and early flowering. {ECO:0000269|PubMed:12451184, ECO:0000269|PubMed:12609028, ECO:0000269|PubMed:12881501, ECO:0000269|PubMed:14716314, ECO:0000269|PubMed:16679456, ECO:0000269|PubMed:18339670, ECO:0000269|PubMed:18466303, ECO:0000269|PubMed:18694458, ECO:0000269|PubMed:19656343}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008219272.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by vernalization in a FLC-independent manner. Repressed by the floral homeotic genes AP1, LFY and SEP3 in emerging floral meristems to establish a floral identity and prevent inflorescence fate. Up-regulated at the shoot apex by SOC1. {ECO:0000269|PubMed:12609028, ECO:0000269|PubMed:14716314, ECO:0000269|PubMed:17428825, ECO:0000269|PubMed:18339670, ECO:0000269|PubMed:18694458}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5763530.0AB576353.1 Prunus mume PmDAM4 mRNA for dormancy associated MADS-box 4, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008219272.11e-159PREDICTED: MADS-box protein AGL24-like isoform X1
SwissprotO827944e-59AGL24_ARATH; MADS-box protein AGL24
TrEMBLA0A2H4N3401e-152A0A2H4N340_PRUMU; Translated dormancy associated MADS-box
STRINGXP_008219272.11e-158(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.16e-39AGAMOUS-like 24
Publications ? help Back to Top
  1. Ramamoorthy R,Phua EE,Lim SH,Tan HT,Kumar PP
    Identification and characterization of RcMADS1, an AGL24 ortholog from the holoparasitic plant Rafflesia cantleyi Solms-Laubach (Rafflesiaceae).
    PLoS ONE, 2013. 8(6): p. e67243
    [PMID:23840638]
  2. Lei HJ, et al.
    Identification and characterization of FaSOC1, a homolog of SUPPRESSOR OF OVEREXPRESSION OF CONSTANS1 from strawberry.
    Gene, 2013. 531(2): p. 158-67
    [PMID:24055423]
  3. Wells CE,Vendramin E,Jimenez Tarodo S,Verde I,Bielenberg DG
    A genome-wide analysis of MADS-box genes in peach [Prunus persica (L.) Batsch].
    BMC Plant Biol., 2015. 15: p. 41
    [PMID:25848674]
  4. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]
  5. Sun LM,Zhang JZ,Hu CG
    Characterization and Expression Analysis of PtAGL24, a SHORT VEGETATIVE PHASE/AGAMOUS-LIKE 24 (SVP/AGL24)-Type MADS-Box Gene from Trifoliate Orange (Poncirus trifoliata L. Raf.).
    Front Plant Sci, 2016. 7: p. 823
    [PMID:27375669]