PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008219331.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 419aa    MW: 45760.5 Da    PI: 7.1425
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008219331.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88.3e-13354399655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el+P+     +k  + a++L +AveYIk+Lq
  XP_008219331.1 354 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 399
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148348398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-16351410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.29E-13352403No hitNo description
Gene3DG3DSA:4.10.280.102.2E-15353410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.9E-10354399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-14354404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MESDLQQHHH KPQQHMNSSL MRYRSAPSSY FASILDSDFC EPLFNRPSSP ETERIFARFL  60
TGEGGGNVGG GGGGTEETAS HHKVTTQTNN QQTQFMVPKV DNEAGVIQQQ QSHLNNYSSV  120
SQGFYQSPSS KPPLPNQSLN SANEGAYSMG TSQLPSVKTG GVTNSNLIRH SSSPAGLFSH  180
MNIDVAGYAA LRGMGNYGAS NSTNEEASFS STSRLKNFSS GPPSTSGLMS PIAEIGNKRM  240
RSDNQDSRGF GDGSGNNYVT GFPIDSWDDS AMMSDDITRS TSFREDDIKA FTGLSSSETQ  300
DVEAGNRPPT LLAHHLSLPK TSAEMAAIEK FMQFQDSVPC KIRAKRGCAT HPRSIAERVR  360
RTRISERMRK LQELVPNMDK QTNTADMLDL AVEYIKDLQT QVQTLSDNRA KCTCSSKQQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16074TGEGGGNVGGGGGGT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008219331.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164099e-38AC216409.1 Populus trichocarpa clone POP024-J08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008219331.10.0PREDICTED: transcription factor bHLH130-like
TrEMBLM5VZC10.0M5VZC1_PRUPE; Uncharacterized protein
STRINGXP_008219331.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41853455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.16e-68bHLH family protein