PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008219358.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 324aa    MW: 36374.9 Da    PI: 6.7848
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008219358.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.8e-13128179155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h  +Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i   A++++k+L+
  XP_008219358.1 128 QRMTHIVVERNRRKQMNEYLAVLRSLMPQS---YAQRGDQASIIGGAINFVKELE 179
                     79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.75E-14126183No hitNo description
SuperFamilySSF474592.88E-17127201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.529127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-10128179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-14128193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-9133184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MALEAVVYPK EYPFGFGCKD FYSFNGGGAS WGCDFISQEG QNNHIEQHVL NENWDYCSSS  60
PSLLQNVKEW DPNSSPEACT ADQSVQPGHL SAMETPPPPP PPSLTTTTNR RKRRRTRSSK  120
NKEEIENQRM THIVVERNRR KQMNEYLAVL RSLMPQSYAQ RGDQASIIGG AINFVKELEQ  180
LLQSMDSNKR SKQQPLAEFF TFPQFSTRAT QSNNNSAGVQ ANEPNMAQSN SNQWAAADIE  240
VTMVDSHANL KILSEKRPRQ LLKMVAGFQS LRLSVLHLNV TTVDEMVLYS VSVKIEEGCL  300
LNTVDEIAAA VNQMLRRIQE GGFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110114RKRRR
2110115RKRRRT
3128139RMTHIVVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008219358.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894290.0KP689429.1 Prunus pseudocerasus isolate Unigene16433 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008219358.10.0PREDICTED: transcription factor bHLH94-like
SwissprotQ9C7T42e-88BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A251RH220.0A0A251RH22_PRUPE; Uncharacterized protein
STRINGXP_008219358.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-83bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]