PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008219409.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 294aa    MW: 33470.1 Da    PI: 5.5266
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008219409.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.71.1e-1957110356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++++eq+++Le+ Fe ++++  e++++LA++lgL+ rqV +WFqNrRa++k
  XP_008219409.1  57 KKRRLSSEQVKALERNFEVENKLEPERKAKLAEELGLQPRQVAIWFQNRRARWK 110
                     45689************************************************9 PP
2HD-ZIP_I/II129.51.4e-4157148293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     kkrrls+eqvk+LE++Fe e+kLeperK++la+eLglqprqva+WFqnrRAR+ktkqlE+dy+ Lk+ yd lk + ++Le+++++L+e+l++
  XP_008219409.1  57 KKRRLSSEQVKALERNFEVENKLEPERKAKLAEELGLQPRQVAIWFQNRRARWKTKQLERDYSILKADYDGLKLNFDSLERQNKALAEKLRH 148
                     9**************************************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.55E-1951114IPR009057Homeodomain-like
PROSITE profilePS5007117.79952112IPR001356Homeobox domain
SMARTSM003897.5E-1855116IPR001356Homeobox domain
CDDcd000863.32E-1657113No hitNo description
PfamPF000465.6E-1757110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.5E-2159119IPR009057Homeodomain-like
PRINTSPR000313.4E-68392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000313.4E-692108IPR000047Helix-turn-helix motif
PfamPF021838.3E-15112153IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
YLKNFSLVPQ LTLKFLSLLV NAEEEKHGKD NYGYSKEFQA MLDSLDQEDC GEEMTGKKRR  60
LSSEQVKALE RNFEVENKLE PERKAKLAEE LGLQPRQVAI WFQNRRARWK TKQLERDYSI  120
LKADYDGLKL NFDSLERQNK ALAEKLRHLK AKLCRDSAES NGSAKEESPI SMCKSSVMEQ  180
SRHQDFSDNG DNAEVNLFKN LKSKDGSSDS DSNGVMKEES NGNSSLGCNN GHSSLSSNSM  240
VNWFQLSDSR SVAGKGFQTQ LVRMEEQSLF STEESCNFFS VDQAPTLHWY SAEQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112RRARWKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008219409.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008219409.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6-like, partial
TrEMBLM5XLY10.0M5XLY1_PRUPE; Uncharacterized protein
STRINGXP_008219409.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.19e-52homeobox protein 6