PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008219428.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 351aa MW: 39153.5 Da PI: 5.6487

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008219428.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.4	1.9e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv++++++G g+W++ ++ g++R++k+c++rw +yl XP_008219428.1 14 KGPWTPEEDQKLVQYIEEHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	52	1.6e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E++ +++++ lG++ W++Ia ++ gRt++++k++w+++l XP_008219428.1 67 RGKFTEDEEQTILHLHSILGNK-WSAIATHLD-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.1E-26	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.188	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.23E-31	11	108	IPR009057	Homeodomain-like
SMART	SM00717	2.3E-16	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	2.3E-18	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	2.80E-13	16	61	No hit	No description
PROSITE profile	PS51294	26.487	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-26	65	117	IPR009057	Homeodomain-like
SMART	SM00717	1.8E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.3E-15	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	1.31E-11	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MGRSPCCDES GLKKGPWTPE EDQKLVQYIE EHGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF TEDEEQTILH LHSILGNKWS AIATHLDGRT DNEIKNFWNT HLKKKLIQMG 120 FDPMTHQPRT DLFSGLSQLL ALANLQDLMQ QYQPLDNDQH AATLQADQAA QLAKLQYMQH 180 LLQSVAYISS GENYSQNRNT ADTDMEAFNL LNSLVPSIKE NPILNSSQLE NPSSFSLGYG 240 GTSQPLHHQS LLPHDPQVPF SSLPSLNSNH EMGSNYTMVS QEDNPPHDHD DSPWFDNLLS 300 PAPNSIPPTM TGMSISNPGG DVCCSTSSYG GRSSGSSSYW PELFLEDANY G

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MGRSPCCDES GLKKGPWTPE EDQKLVQYIE EHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF TEDEEQTILH LHSILGNKWS AIATHLDGRT DNEIKNFWNT HLKKKLIQMG  120
FDPMTHQPRT DLFSGLSQLL ALANLQDLMQ QYQPLDNDQH AATLQADQAA QLAKLQYMQH  180
LLQSVAYISS GENYSQNRNT ADTDMEAFNL LNSLVPSIKE NPILNSSQLE NPSSFSLGYG  240
GTSQPLHHQS LLPHDPQVPF SSLPSLNSNH EMGSNYTMVS QEDNPPHDHD DSPWFDNLLS  300
PAPNSIPPTM TGMSISNPGG DVCCSTSSYG GRSSGSSSYW PELFLEDANY G

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	7e-30	12	116	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008219428.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008219428.1	0.0	PREDICTED: protein ODORANT1
Swissprot	Q9S9Z2	1e-115	MYB93_ARATH; Transcription factor MYB93
TrEMBL	M5XKW7	0.0	M5XKW7_PRUPE; Uncharacterized protein
STRING	XP_008219428.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF402	34	172

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	1e-104	myb domain protein 93

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]