PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008219753.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 513aa    MW: 56032.2 Da    PI: 5.1098
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008219753.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS343.92.6e-1051265041374
            GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsevsP 89 
                     lv+lL+++Aea++  +++  la+ +L rl+el+sp++ ++m+RlaayfteAL+  l + +    k l  + t++++    ++++aa++l++++sP
  XP_008219753.1 126 LVHLLMAAAEALTGANKSrdLARVILVRLKELVSPTDgTNMERLAAYFTEALQGLLEGAGGVQGKHLIGNGTHRDHgqhPTDVIAAFQLLQDMSP 220
                     68**********997776669***********9987769******************966555555543333333334599************** PP

            GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                     ++kf+h+taNqaIleav +++rvH++D+di++G+QW++L+qaL sR++gpp  +lRiT++++  sg  s  +++etg+rL+ fA+++g pf+f+ 
  XP_008219753.1 221 YVKFGHFTANQAILEAVVHDRRVHVVDYDIMEGIQWASLMQALVSRKDGPPtpHLRITALSRGGSGrrSIGTVQETGRRLTAFAASIGQPFSFHQ 315
                     ***********************************************776556*********888898999************************ PP

            GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleak 274
                        ++ e++++++L++ +gEal++n++l+l ++  +s ++     ++L+  k+l+P++v++ve+e+   +++ F++rf+++l++ysa++dslea+
  XP_008219753.1 316 CRLDSDETFRPSALKLVKGEALVINCMLNLPHFSYRSPDSIA---SFLSGAKTLNPRLVTLVEEEVRPvGDGGFVARFTDSLYHYSAVYDSLEAG 407
                     9999*****************************966665555...9********************999************************** PP

            GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLv 368
                     +p +s++r+ vEr++lg++i   +a   ++   + e   +W+e+l+++GFkp+p+s  + +qaklll  ++ dgyrvee  ++ lvlgWk+r L+
  XP_008219753.1 408 FPMQSRARALVERVFLGPRIAGSLARIYRA---NGEVGCSWSEWLGAVGFKPMPISFANHCQAKLLLGLFN-DGYRVEEVgNHRLVLGWKSRCLL 498
                     ****************************99...889999********************************.******87588899********* PP

            GRAS 369 svSaWr 374
                     s+S W+
  XP_008219753.1 499 SASIWT 504
                     *****6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.666100484IPR005202Transcription factor GRAS
PfamPF035149.1E-103126504IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MTQLLLSSAM AMAIDQTLGG HPFDLDLSGC STTTTNTMSS DHWYDWSPVV DWDALAPTDQ  60
LAGDDFHELI ESMMEDQDGT EMNSSSAQDE VHELEASNDT TSSGEIMMLT EEDGGANGED  120
SKGLRLVHLL MAAAEALTGA NKSRDLARVI LVRLKELVSP TDGTNMERLA AYFTEALQGL  180
LEGAGGVQGK HLIGNGTHRD HGQHPTDVIA AFQLLQDMSP YVKFGHFTAN QAILEAVVHD  240
RRVHVVDYDI MEGIQWASLM QALVSRKDGP PTPHLRITAL SRGGSGRRSI GTVQETGRRL  300
TAFAASIGQP FSFHQCRLDS DETFRPSALK LVKGEALVIN CMLNLPHFSY RSPDSIASFL  360
SGAKTLNPRL VTLVEEEVRP VGDGGFVARF TDSLYHYSAV YDSLEAGFPM QSRARALVER  420
VFLGPRIAGS LARIYRANGE VGCSWSEWLG AVGFKPMPIS FANHCQAKLL LGLFNDGYRV  480
EEVGNHRLVL GWKSRCLLSA SIWTSPSESD FVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-551115073381Protein SCARECROW
5b3h_D4e-551115073381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008219753.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008219753.10.0PREDICTED: nodulation-signaling pathway 2 protein
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLM5XQY10.0M5XQY1_PRUPE; Uncharacterized protein
STRINGXP_008219753.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62643152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-160GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]