PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220039.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 1024aa    MW: 112295 Da    PI: 5.1272
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220039.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.51.5e-183783148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEde+l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
   XP_008220039.1 37 KGQWTPEEDEILRRAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 83
                     799****************************9.************986 PP
2Myb_DNA-binding66.54.9e-2189135148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEde+++++vk++G++ W+tIa++++ gR +kqc++rw+++l
   XP_008220039.1  89 KGPWSKEEDEIIIELVKKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 135
                      79******************************.*************97 PP
3Myb_DNA-binding47.15.5e-15141183145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT++E++ l++a++++G++ W+   + ++ gRt++ +k++w+
   XP_008220039.1 141 KEAWTQDEELALIRAHQMYGNK-WAELTKFLP-GRTDNAIKNHWN 183
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.1773283IPR017930Myb domain
SMARTSM007171.2E-153685IPR001005SANT/Myb domain
PfamPF002492.7E-163783IPR001005SANT/Myb domain
SuperFamilySSF466896.03E-163893IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-243995IPR009057Homeodomain-like
CDDcd001672.07E-144083No hitNo description
PROSITE profilePS5129434.56784139IPR017930Myb domain
SuperFamilySSF466891.05E-3186182IPR009057Homeodomain-like
SMARTSM007174.2E-2088137IPR001005SANT/Myb domain
PfamPF002492.7E-1989135IPR001005SANT/Myb domain
CDDcd001679.97E-1891135No hitNo description
Gene3DG3DSA:1.10.10.602.3E-2896139IPR009057Homeodomain-like
PROSITE profilePS5129419.147140190IPR017930Myb domain
SMARTSM007172.1E-14140188IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-21140190IPR009057Homeodomain-like
PfamPF002492.1E-13141184IPR001005SANT/Myb domain
CDDcd001675.28E-11143183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 1024 aa     Download sequence    Send to blast
MEGDRTNSTP SEGLGDSIQK VRALHGRTSG PTRRSTKGQW TPEEDEILRR AVQRFKGKNW  60
KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEII IELVKKYGPK KWSTIAQHLP  120
GRIGKQCRER WHNHLNPGIN KEAWTQDEEL ALIRAHQMYG NKWAELTKFL PGRTDNAIKN  180
HWNSSVKKKL DSYLKSGLLT QFQGLPHVGH QNQSVLSSSS RMQSSGDDSG AKAAEGEEIS  240
ECSQDSTVAG CFLSATEMTN VVPHPREEFQ INEVSRLGND PSCSPASCSE PYYPSVGDAT  300
FSIPEIPPEM VCSKFIEQNF SHEAGASMSG DFQFNLHELP INSSLECGQE SSRMHTHCVG  360
CNESHEGANA PFQTSTSMGN MAVGFIKSEH MLISDDECCR VLFSDAMNGG CFSSGDFTNG  420
ANMVDLGACT DSVLLQPSNL QISETGRTSA SQVYHPLSSD VTGTSCSQVV SAHEGPLIYA  480
GEPSHLFRVQ EQEFVTNSND GFIYANDSAS NDTGMQEQSD LVKDPSKLVP VNTFDSGLDL  540
QNCPVDVRSD EQTEQQDGGA LCYEPPRFPS LDIPFFSCDL VQSGNDMQQX NCLTPYRLWD  600
SPSRESSPDA VLKSAAKTFT GTPSILKKRH RDLLSPLSPL SDRRIDKRLG TDLTSSLARD  660
FSRLDVMFED SEEKTTLLSP SSNKNRNSDS PSEDKENKGT CESRIEKGTD STALSDDGIA  720
HKDFDNGESQ EKTKQFQGIA DIDAKNKVDV VPTSQIAQQT SGVLVEHNAN DLLLCSPVGC  780
KAEKALGTST KTPRSQFRKS FEATNPGVPS KSFSARQCAS VKSPTICVKK HESYSLVDTC  840
VQSDSLSAPP ETTGDNAGND ISIENIFGDT PFKRSIESPS AWKSPWFINS FVPGPRVDTE  900
ISIEDIGFFM SPGDRSYDAI GLMKQISEQT AAAYANAQEV LGNETPETLF RERRKNQALV  960
DPENNHGPPN QPGSSSLSAA NVLVERRTLD FSECGTPGKG IENAKSSNAK TFSSPSSYLL  1020
KGCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-69371906159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-69371906159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008220039.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220039.10.0PREDICTED: LOW QUALITY PROTEIN: myb-related protein 3R-1-like
TrEMBLA0A251RDM50.0A0A251RDM5_PRUPE; Uncharacterized protein
STRINGXP_008220039.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37273362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein