PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220055.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family CPP
Protein Properties Length: 609aa    MW: 65987.1 Da    PI: 8.2747
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220055.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.41.6e-14137175241
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                     ++k+CnCk+s+Clk+YCeCfaag +C+  C+C++C+N+ +
  XP_008220055.1 137 KQKQCNCKNSRCLKLYCECFAAGIYCEG-CNCSNCHNNVD 175
                     89*************************9.********986 PP
2TCR50.15.6e-16221260140
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     k++kgC+C+ks ClkkYCeCf+a+  Cse+CkC +CkN e
  XP_008220055.1 221 KHNKGCHCRKSGCLKKYCECFQANILCSENCKCMGCKNFE 260
                     589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.7E-17136176IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.925137261IPR005172CRC domain
PfamPF036381.7E-11138173IPR005172CRC domain
SMARTSM011141.3E-19221262IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.9E-12224259IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MEQSETVSQI APKKLARQLD FTTVCLASAN AALPEVQLQL QLQAPSQAQL SQNSPATSHV  60
HLQLQSPPPP AVAQSPKQLT PPPAIPQFLA RPSPSPAANS RIQHPVHKLS ISTSQASKQE  120
SPISRQRGDG KDGTPKKQKQ CNCKNSRCLK LYCECFAAGI YCEGCNCSNC HNNVDNEAAR  180
QEAVGLILER NPNAFRPKIA SSPQESRDGR EDAGEIQAPG KHNKGCHCRK SGCLKKYCEC  240
FQANILCSEN CKCMGCKNFE GSEERRALHH EDHNTVAYMQ QANAAISGAI GSSGYGTPLV  300
SRKRKSYELY FGTTNQTTHP IKQPQQENHL RPPLASSSLS SVPNCRTANA AVSRSSKSTY  360
RSPLADIIQS KNIKDLCSHL VVVSGAAAEA LAGNRRRETI DESSTNLFTQ EGKECKKEHD  420
IQNSVHDDHL GVKEADRDES SYSGLNGGDV QNSRPMSPGT LALMCDEQDK MFMAAGLPNG  480
VGSSSPSMTQ NSTQEIGCTE VYAEQERLVL TGFRDFLNHL ITRGSIKETM CSPQAKRERV  540
SQRESVQGGT AKPSPEPRCQ KEAYSNGIAK SPVSANGKML QLVTTLHPVA TVTSGDNDLS  600
LKVGLPIEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-301282701132Protein lin-54 homolog
5fd3_B1e-301282701132Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1300305SRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008220055.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220055.10.0PREDICTED: protein tesmin/TSO1-like CXC 5
TrEMBLA0A314U9Y30.0A0A314U9Y3_PRUYE; Protein tesmin/TSO1-like CXC 5
STRINGXP_008220055.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-125Tesmin/TSO1-like CXC domain-containing protein