PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008220077.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

ERF

Protein Properties

Length: 258aa MW: 28161.2 Da PI: 4.8611

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008220077.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.3	9.4e-19	67	117	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g XP_008220077.1 67 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 117 68***998.******843...6*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	5.0E-13	67	117	IPR001471	AP2/ERF domain
SMART	SM00380	1.5E-36	68	131	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.31E-21	68	125	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	7.0E-32	68	126	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.42	68	125	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.7E-10	69	80	IPR001471	AP2/ERF domain
CDD	cd00018	6.67E-32	69	127	No hit	No description
PRINTS	PR00367	2.7E-10	91	107	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MSSDQTQGSE TESSSNSFTS TTPPSSPSSL QNPLSANLQK PNSPIHQEIE LPGKKNTKRG 60 RDSSKHPVYR GVRMRNWGKW VSEIREPRKK SRIWLGTFPT PEMAARAHDV AALSIKGNSA 120 ILNFPELSDS LPRPVSLAPR DVQAAASKAA QMHQFDANPS MSCSMLSSSS SSSLSSLVSA 180 IDNLSTESEE LSEIVELPSL GYESTELRSE FVFVDSEDQW VYPPPWLQRL GDCGGGYVCD 240 ELGTPSSSGF EGSLWEYN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	5e-19	63	125	9	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008220077.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT369536	0.0	KT369536.1 Prunus pseudocerasus AP2/EREBP family transcription factor-like protein 4 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008220077.1	0.0	PREDICTED: dehydration-responsive element-binding protein 3
Swissprot	Q9LYD3	4e-76	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A0M4KET4	0.0	A0A0M4KET4_9ROSA; AP2/EREBP family transcription factor-like protein 4
STRING	XP_008220077.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF192	34	263

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	5e-76	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]