PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220086.2
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 716aa    MW: 79320 Da    PI: 10.1829
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220086.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.48.6e-14649701255
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++  g++ AeIrdp   +   r r++lg + t eeAa a+++a+++++g
  XP_008220086.2 649 HYRGVRQRR-LGKFTAEIRDPA--KkvSRNRVWLGCYETSEEAALAYDRAAQRIHG 701
                     7*****999.8*********84..34335*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.7E-25648709IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-17649710IPR016177DNA-binding domain
PfamPF008473.6E-10649701IPR001471AP2/ERF domain
PROSITE profilePS5103220.995649709IPR001471AP2/ERF domain
CDDcd000181.72E-24649710No hitNo description
SMARTSM003807.4E-28649715IPR001471AP2/ERF domain
PRINTSPR003672.1E-6650661IPR001471AP2/ERF domain
PRINTSPR003672.1E-6675691IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MHMAGSCGCA FGNFPVVCNR CGIQIVHRQV QEHAQNCPGV QPQAQQADGA LDTSASGTSA  60
TADQTQAATQ SGVAKSQAQV FQITSVTPPG SDPDQKANSS SQAVVQAAVQ TAEQWYQHQQ  120
QYQQYYLKNY FTYQQAAVQQ SQQRHLQSHP TYGTVQNQPR AYLQSQPQTQ PSLRAQLSQS  180
QAQPQPQIQP PHVQVPVASQ TQNQAQVNKQ QQLHPAVQTY PAARRQPLPQ PQYFQAPSHS  240
QPHPQHVQMP HNQQAQIQQH THSKIHPQHH PISQPQPHSQ PQPQLQRHPQ PHPQLHPSQP  300
MNTTVQPQTQ HPSSHAVTGN HLYPQPRLHQ PVQSGAPQQR TMDMQSHGVP HSQSQTPVQI  360
QSQSPQQPPV MRLPPSHIPN QQQPALLPSP GQIRNINPAQ QQPVHSYAQQ PGNTVQQRPL  420
MHAVQRSIPR QYLHHQPYVQ QQPPTQLHPR GQSHSFPLHV HASTQSQRNI ALSQGIELSQ  480
SNLGGSRRPM MPIHGVQSQT SVQTAGGLHM RPVHPAVNLP STNQSNMVRT KNLVQSGANW  540
RPTTSERHAE QESESSAQQI VKNVTHDVGT ASAVVGDAEV KTGKSEMDMK SIDNEVKPTG  600
EDKTNHGDTS SKEIPDIHAL ENGESVSHSM LNAADQNKAR KSGVARGRHY RGVRQRRLGK  660
FTAEIRDPAK KVSRNRVWLG CYETSEEAAL AYDRAAQRIH GSKALLNFPI CHTRLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-24645710164ATERF1
3gcc_A2e-24645710164ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008220086.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT3695330.0KT369533.1 Prunus pseudocerasus AP2/EREBP family transcription factor-like protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220086.20.0PREDICTED: mediator of RNA polymerase II transcription subunit 15-like
TrEMBLA0A251NL810.0A0A251NL81_PRUPE; Uncharacterized protein
STRINGXP_008220086.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF798922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.12e-17ethylene responsive element binding factor 1