PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220156.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 238aa    MW: 26353.3 Da    PI: 9.9748
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220156.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.5e-183479147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd  l ++v+++G+++W++I+r++  gR++k+c++rw + 
   XP_008220156.1 34 KGPWSAEEDRVLTRLVERYGPRNWSLISRYIK-GRSGKSCRLRWCNQ 79
                     79*****************************9.***********985 PP
2Myb_DNA-binding53.45.9e-1788130347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++++ Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ 
   XP_008220156.1  88 PFSQAEDETILAAHARFGNR-WATIARLLP-GRTDNAVKNHWNST 130
                      79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.882984IPR017930Myb domain
SuperFamilySSF466893.09E-3131127IPR009057Homeodomain-like
SMARTSM007175.5E-163382IPR001005SANT/Myb domain
PfamPF002494.5E-173479IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-243587IPR009057Homeodomain-like
CDDcd001671.01E-143678No hitNo description
SMARTSM007171.5E-1485133IPR001005SANT/Myb domain
PROSITE profilePS5129420.17886135IPR017930Myb domain
CDDcd001673.60E-1188131No hitNo description
PfamPF002496.6E-1488130IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-2388134IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MEAMNRCSSS TSSSDTSSSE SSLPRNPNKP ERIKGPWSAE EDRVLTRLVE RYGPRNWSLI  60
SRYIKGRSGK SCRLRWCNQL SPNVEHRPFS QAEDETILAA HARFGNRWAT IARLLPGRTD  120
NAVKNHWNST LKRRVRGEHH HHHQIDGVNF VGGGGNVANN EGMSTSSVSG SLVNGSVEFD  180
PLTELTLAPP GISGAAVVSV RQRSESLPSG FWDTMRDVIA REVRDYVATT FSEPSGLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-433013554159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-433013554159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008220156.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220156.11e-175PREDICTED: transcription factor MYB44-like
SwissprotO231602e-57MYB73_ARATH; Transcription factor MYB73
TrEMBLM5XHQ51e-173M5XHQ5_PRUPE; Uncharacterized protein
STRINGXP_008220156.11e-175(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50743256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.12e-58myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]