PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008220213.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Protein Properties

Length: 233aa MW: 26384.5 Da PI: 10.3039

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008220213.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.2	2.6e-17	134	223	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+++ps+v+ +l l +f++eh + ++ +tl de+g ++ + rk++ l++GWk+F+ a++L +gD +vF+l++r+ f + XP_008220213.1 134 FVKTMLPSHVSGGFWLGLQVQFCKEHlpK----GDEVMTLIDEDGDEYPTIYLARKTG----LSGGWKGFAVAHDLVDGDALVFQLIRRTAF--K 218 89**********************543....4458***********656665....************************9999..7 PP EEEE- CS B3 94 vkvfr 98 v ++r XP_008220213.1 219 VYILR 223 77766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	6.87E-24	128	224	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	6.9E-21	129	223	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.08E-27	132	223	No hit	No description
PROSITE profile	PS50863	11.476	134	225	IPR003340	B3 DNA binding domain
SMART	SM01019	1.4E-24	134	225	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.1E-14	134	223	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MGKIVMAKSK LSYEESRRQR LEENKKRMEA LNLPQLAQAL KTTSSPKPSP MKRTKPRTVE 60 KQMVVVRRSS RVANLPTPVY KEVVVDRVMI PRKSYSSRHR DLSNRVYASD EARAEAMERA 120 ENLESGLGSD HPIFVKTMLP SHVSGGFWLG LQVQFCKEHL PKGDEVMTLI DEDGDEYPTI 180 YLARKTGLSG GWKGFAVAHD LVDGDALVFQ LIRRTAFKVY ILRVGRPEDG NKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008220213.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008220213.1	1e-173	PREDICTED: B3 domain-containing protein At5g42700-like
Swissprot	Q9FMZ4	3e-80	Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBL	A0A251REU1	1e-170	A0A251REU1_PRUPE; Uncharacterized protein
STRING	XP_008220213.1	1e-172	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3336	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	2e-76	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]