PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220247.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 281aa    MW: 31817.7 Da    PI: 7.4981
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220247.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM86.64.8e-27121411127
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkklel..eevikevdiykvePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                     lppG+rF P++e+l+++yL +k ++++ +    + i+e+d+y+++P dLp +   ++ +  ++ ++F+ + +       k+r +ksgyW+ +g+d
  XP_008220247.1  12 LPPGCRFYPSEEQLLCCYLSNKNDADPAQSggYDLIRELDLYDHDPFDLPdSacyAYGHAGRKRHWFCYTVRVL-----KERRAKSGYWRRKGRD 101
                     79**********************99966522567**************9535552222334555555555543.....3455699********* PP

             NAM  90 kevlsk.kgelvglkktLvfykgrapk.gektdWvmheyr 127
                     ++v+ + ++++ g ++++vfy g++p+ +++tdWv+ +y+
  XP_008220247.1 102 RDVVGRgGKAVLGRRTSFVFYLGNSPNtAVRTDWVLYQYA 141
                     *****9556678*********997665167*********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-328158IPR003441NAC domain
PROSITE profilePS5100535.04412158IPR003441NAC domain
PfamPF023653.7E-1513141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGDPKATSLR SLPPGCRFYP SEEQLLCCYL SNKNDADPAQ SGGYDLIREL DLYDHDPFDL  60
PDSACYAYGH AGRKRHWFCY TVRVLKERRA KSGYWRRKGR DRDVVGRGGK AVLGRRTSFV  120
FYLGNSPNTA VRTDWVLYQY AQVDHVKASF VLCRVFVRSR RGNRLSYNWV SSCAEESACT  180
VRHIGIQHDG FHTPNIVETE VHGDNSAHRK NEMLSFPMRL DCEINDRVKN GPVSISRLQP  240
NGQVPSSVLG GSNPIFLDDL ATEHLLSIVE GDFIELDDLN D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-211116416171NO APICAL MERISTEM PROTEIN
1ut4_B3e-211116416171NO APICAL MERISTEM PROTEIN
1ut7_A3e-211116416171NO APICAL MERISTEM PROTEIN
1ut7_B3e-211116416171NO APICAL MERISTEM PROTEIN
3swm_A4e-211116419174NAC domain-containing protein 19
3swm_B4e-211116419174NAC domain-containing protein 19
3swm_C4e-211116419174NAC domain-containing protein 19
3swm_D4e-211116419174NAC domain-containing protein 19
3swp_A4e-211116419174NAC domain-containing protein 19
3swp_B4e-211116419174NAC domain-containing protein 19
3swp_C4e-211116419174NAC domain-containing protein 19
3swp_D4e-211116419174NAC domain-containing protein 19
4dul_A3e-211116416171NAC domain-containing protein 19
4dul_B3e-211116416171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008220247.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220247.10.0PREDICTED: NAC domain-containing protein 104-like isoform X1
TrEMBLM5XHW60.0M5XHW6_PRUPE; Uncharacterized protein
STRINGXP_008220247.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130012628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.22e-21NAC family protein