PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008220315.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 223aa MW: 23934.2 Da PI: 8.4914

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008220315.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93.9	1.8e-29	2	102	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C++ C+l+ ++ p++q +++ +++k+FG+s +l++++a+pe +r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+ XP_008220315.1 2 SCNGCRVLRKGCSETCILRSCLqaidtPEAQGNATLFLAKFFGRSDLLSFISAVPEPQRPALFQSLLFEACGRTVNPVNGAVGLLSSGNWHVCQS 96 6*******************9999999999************************************************************* PP DUF260 91 kaelal 96 ++e++l XP_008220315.1 97 AVETVL 102 *99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.532	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.9E-25	2	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MSCNGCRVLR KGCSETCILR SCLQAIDTPE AQGNATLFLA KFFGRSDLLS FISAVPEPQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLSSGN WHVCQSAVET VLSGGVLRPL TAVLTPSLHE 120 SSETSSRGAC TLQNLYYPPV PSAYYDEERI QPFDAGLSLK PNLAAGERGR GRGMRSSSCV 180 STAVGKRRRD TVSFSSEESV MTSSTSFERG GGLKDRKVLN LFV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008220315.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008220315.1	1e-162	PREDICTED: LOB domain-containing protein 37-like
Swissprot	Q9SZE8	4e-62	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	A0A314YVK8	1e-146	A0A314YVK8_PRUYE; LOB domain-containing protein 39
STRING	XP_008220315.1	1e-161	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	4e-64	LOB domain-containing protein 39