PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220402.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRF
Protein Properties Length: 590aa    MW: 63606.5 Da    PI: 8.8993
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220402.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.81.1e-24210254145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+epgrCrRtDGKkWRC+r++++++k+CErH++rgr+rsrk++e+
  XP_008220402.1 210 DPEPGRCRRTDGKKWRCWRDAVPDQKYCERHMNRGRHRSRKPVEP 254
                     79****************************************985 PP
2QLQ62.51.1e-21144180137
             QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                     ++FT++Q+++L++Q+l+yKy+ an+P+P++Ll +i+k
  XP_008220402.1 144 GPFTPSQWMELEHQALIYKYITANVPIPSNLLIPIKK 180
                     59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009516.4E-13144180IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.91145180IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088809.5E-16145178IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.023210254IPR014977WRC domain
PfamPF088792.8E-20211253IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MDFGVVGFDG LGGAAAETGF ASLASSSSDQ ETKQKWYGSG FHKQGRSAGT VEEDWRSSKL  60
PKTDDFLSAS KTMPNNSTHF SDGQQLLSFS NSPNSEAVLV DKSTQNASLP YFHQPLSAYS  120
RSAGHNTGSF NGAAMHWAIA GARGPFTPSQ WMELEHQALI YKYITANVPI PSNLLIPIKK  180
ALDSAFPNGL QRSNTLGWGS IHLGFSNNTD PEPGRCRRTD GKKWRCWRDA VPDQKYCERH  240
MNRGRHRSRK PVEPVAGTAA ATTTTTTSKQ LMPSASSSAS SVSITAGGGS SSLGIANQQL  300
KSLQPAASNS SAATQMNRMF VNKENVGERM HQTPGPSMLS KENPFLIQKQ QMGYEESSRT  360
EFGLVPSDSL LNPSQKGSSL MSCRNYGSSS QNLIDPAETN SQQHSLRHFI DNWPKNQSDR  420
PAISWPDQFD MQSDRTQLSI SIPIASSDFI PSTSSTNNEK LTLFPLRLSR ELDPKPMGLG  480
VGSALNAQNN KQANWIPISR ETSLGGPLGE VLHHTNNNTA AECKNSSVLN LMTQEWDKNS  540
PSSLGSSPTG VLQKTAFGSL SNSSAGSSPR AENNNLLGSS ILDSSSLPAL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008220402.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4733682e-45AM473368.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X262323.6, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220402.10.0PREDICTED: growth-regulating factor 6-like
TrEMBLM5XR270.0M5XR27_PRUPE; Uncharacterized protein
STRINGXP_008220402.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20853481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.15e-84growth-regulating factor 1