PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220425.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TALE
Protein Properties Length: 386aa    MW: 44011.7 Da    PI: 6.5965
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220425.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.91.9e-093143482155
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     k +yps++e+  LA+++gL+++q+ +WF N+R ++
  XP_008220425.1 314 KWPYPSESEKVALAESTGLDQKQINNWFINQRKRH 348
                     669*****************************885 PP
2ELK35.91.6e-12268289122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK++Ll+KYsgyL+sLkqE+s
  XP_008220425.1 268 ELKNHLLKKYSGYLSSLKQELS 289
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.5E-21120164IPR005540KNOX1
PfamPF037902.5E-22121163IPR005540KNOX1
SMARTSM012562.7E-28171222IPR005541KNOX2
PfamPF037916.8E-24175220IPR005541KNOX2
PfamPF037897.6E-10268289IPR005539ELK domain
PROSITE profilePS5121311.243268288IPR005539ELK domain
SMARTSM011881.0E-6268289IPR005539ELK domain
PROSITE profilePS5007112.957288351IPR001356Homeobox domain
SuperFamilySSF466891.67E-19289363IPR009057Homeodomain-like
SMARTSM003892.8E-13290355IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-27293354IPR009057Homeodomain-like
CDDcd000866.46E-12300352No hitNo description
PfamPF059201.1E-16308347IPR008422Homeobox KN domain
PROSITE patternPS000270326349IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MEEYNQMDHE SSGGRGNFLY ASPNLGGNYG RASHDHQIGI NAFHLQSSGG GDFHSPGGGH  60
PINVKTEAST SHHGHHKFQY NNNNNNNPLL SSRGHQPVVQ QQHNLDRQND DHTLSSNEVE  120
AIKAKIIAHP QYSNLLEAYM DCQRVGAPSE VVARLTAARQ EFEARQRSSV ASREASKDPE  180
LDQFMEAYYD MLVKYREELT RPIQEAMDFM RRIETQLNML GNNNAPPLRI FSPSDDKCEG  240
IGSSEEEQEN SGGETEVPEI DPRAEDRELK NHLLKKYSGY LSSLKQELSK KKKKGKLPKD  300
ARQKLLSWWE LHYKWPYPSE SEKVALAEST GLDQKQINNW FINQRKRHWK PSEDMQFMVM  360
DGLHPQNAAL YMDGHYIGDG HYRLGP
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008220425.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3580500.0DQ358050.1 Prunus persica knotted-like transcription factor (KNOPE1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220425.10.0PREDICTED: homeobox protein knotted-1-like 2
SwissprotO041350.0KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLA2SW520.0A2SW52_PRUPE; KNOPE1
STRINGXP_008220425.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45843246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-121KNOTTED-like from Arabidopsis thaliana