PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220473.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GATA
Protein Properties Length: 345aa    MW: 37726.3 Da    PI: 9.2617
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220473.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.53.6e-18211244134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     Cs C+t +TplWR+gp g+k+LCnaCG+++rk +
  XP_008220473.1 211 CSDCHTNSTPLWRSGPLGPKSLCNACGIRQRKAR 244
                     *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.3E-17205256IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.466205241IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.9E-12207245No hitNo description
Gene3DG3DSA:3.30.50.107.6E-15209244IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.26E-12210242No hitNo description
PROSITE patternPS003440211236IPR000679Zinc finger, GATA-type
PfamPF003208.5E-16211244IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MMTPVYLNPA SSPFSMVEQA EDQRLKLFIS PPYDEAASCT SFPFPTFFDS LQDQTPGTTF  60
TSLAHHQSQL YHHKDKNIWD CGTSYDQASS SSSLVQAHVV DAISNKDRRL SRCGDHERET  120
NIGGGGGGGG GEEEGKSSNY IKRPKSVKWM SPKMRLMQKM TSNNPDLPPG TTDHIAAEIS  180
EHKFQIHAQP REISETSFSS NSNNTAAVRV CSDCHTNSTP LWRSGPLGPK SLCNACGIRQ  240
RKARRAMSEA AAAAANGFAV GSADTSSPKG KVAKEKKSRG SHKNKNSKLI ITDNASISHY  300
NKKNNNNKKK ICFKALDFQR VFPQDVAEAA MLLMELSCGL INNHS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008220473.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220473.10.0PREDICTED: GATA transcription factor 21-like
TrEMBLA0A251RBV20.0A0A251RBV2_PRUPE; Uncharacterized protein
STRINGXP_008220473.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.12e-18GATA family protein